barSeed - Barley Seed Development Database

Probe CUST_20589_PI390587928

Source Contig U35_8365

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20589_PI390587928	Hv_44K_v2	AGAGGCCCAGCAGTTAAACAAGGATATCTTTGAGACTATCTACTATCATGCATTGAAAGC	1835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15081.2	2748	2e-24	978 - 1037	100	60 / 60	minus	ABC08195 ABC14526
MLOC	MLOC_15081.1	2800	2e-24	1106 - 1165	100	60 / 60	minus	ABC08195 ABC14526
JLOC1	JLOC1_10326.1	2828	8e-25	1641 - 1700	100	60 / 60	plus
Harvest21	ABC17851	1895	3e-25	1836 - 1895	100	60 / 60	plus
Harvest35	U35_8365	1895	3e-25	1836 - 1895	100	60 / 60	plus

Contig Sequence (1895 bp)

>U35_8365 1895 Hv_44K_v2
CTCCTCCTCAAAGCGCCCCCCCCCCTCCAGCCTCCGCTCCAAAACAATCCCCTTTCCTCC
GTCTCTCCAAGCCACCGCCGATCCCTCGAGCCGGAGGCCGTTCCGAACCCCTCCTCGCCG
CGCCACCGCCGATCGCCTCCCCTCTCGCCCCGGCTCCCGCGCCCGCCCGCCCGCCCGCCA
GGTGTTCGACGGAAGGCCGGGCCGGGCGGCGCGATGTACGTGGTGAAGCGCGACGGGCGG
CAGGAGGCGGTCCACTTCGACAAGATCACGGCGCGGCTCAAGAAGCTCGCCTACGGCCTC
AGCCAGGACCACTGCGACCCGGTCCTCGTCGCCCAGAAGGTCTGCGCCGGCGTCTACAGG
GGCGTCACCACCTCTCAGCTCGACGAGCTCGCCGCCGAGACCGCCGCCGCCATGACCGCC
TCCCACCCCGACTACGCATCGCTCGCGGCCAGGATCGCCGTCTCCAACCTGCACAAGAAC
ACCATGAAGTCCTTCTCAGAGACGGTGAAGGTCATGTACACACATTTCAACGAGAGGTCT
GGGTTGATGGCTCCCCTGATCGCAGATGATGTCTACGAGATCATCATGAAGAATGCTACA
CGCCTGGACAGTGAGATAATTTATGATAGAGACTTTGACTATGATTTCTTTGGGTTTAAG
ACGCTTGAGAGGTCCTATCTACTGAAAGTTGGTGGGAAAGTTGTGGAAAGACCGCAACAT
ATGTTAATGAGGGTTTCTGTTGGGATACACAAGGATGATATTGAGTCTGCTGTCAAAACA
TACCACATGATGTCTCAGCGCTGGTTTACTCATGCTTCCCCAACCCTTTTCAATGCTGGC
ACTCCAAGGCCTCAATTAAGCAGCTGCTTTCTTGTCTGCATGAAAGACGATAGTATTGAG
GGAATTTATGATACTCTCTCGGAATGTGCTTCCATAAGCAAATCAGCTGGAGGGATTGGT
GTTTCAATTCACAACGTCCGGGCTACTGGCAGTTACATTCGTGGAACAAATGGAACTTCT
AATGGAATTGTTCCCATGCTACGTGTTTTCAATGACACTGCACGCTATGTTGATCAAGGT
GGAGGCAAGAGAAAAGGTGCATTTGCTATATACTTGGAGCCTTGGCATGCTGATATTTAT
GAGTTCCTTGATTTGAGAAAGAACCATGGAAAGGAGGAGAATCGTGCCAGGGACCTTTTC
TATGCTCTCTGGATTCCTGATTTATTCATGGAAAGGGTGCAAAAAAATGAGCAATGGTCA
TTATTTTGTCCCAGTGAAGCTCCAGGTTTGGCTGATTGCTGGGGAGATGAGTTTCAGAAT
CTGTACAATAAATATGAAAGAGAAGGCAAAGCCAAGAAAATTGTTTCAGCACAGTCCCTT
TGGTTTGAAATTTTGAAGGCACAGATAGAAACTGGAACACCATATATGCTTTACAAGGAC
AGTTGCAACAGAAAAAGTAATCAACAAAATCTGGGCACAATTAAGTCTTCCAACTTGTGC
ACAGAGATAGTTGAGTTCACAAGTCCCACTGAAACTGCTGTGTGCAATCTGGCATCAATT
GCTTTGCCACGTTTTGTAAGAGAAAAGGGTGTTCCGATAGAGTCCCATCCAGCTAAGCTT
GTTGGCAGCATTGGGTCAAAAAATAGATATTTCGATTTTGATAAATTAGCCGAGATTACT
TCAGTTGTTACTTGGAATCTCAACAAAATTATTGATATCAACTACTACCCTATTGAGACA
GCAAGGAGGTCAAATATGAGGCACAGGCCAATTGGAATAGGTGTTCAAGGCTTAGCAGAC
ACTTTCATTNTACTTGGCATGCCATTTGATTCACCAGAGGCCCAGCAGTTAAACAAGGAT
ATCTTTGAGACTATCTACTATCATGCATTGAAAGC

Homology of Contig U35_8365 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g56100.1	811	protein\|ribonucleoside-diphosphate reductase large subunit, putative, expressed
Brachypodium v1_2	Bradi3g54557.1	811
Arabidopsis v10	AT2G21790.1	816	\| Symbols: R1, RNR1, CLS8, ATRNR1 \| ribonucleotide reductase 1 \| chr2:9293529-9297580 FORWARD LENGTH=816