barSeed - Barley Seed Development Database

Probe CUST_2046_PI390587928

Source Contig U35_20742

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2046_PI390587928	Hv_44K_v2	GCTTCGCATTGTTTATTTTCTTCAGACATTGCAATTTTCCATCCAGATGGTGATTTTTGT	1244	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.505	1.585	1.184	0.830	0.283	0.435
Raw	42.624	70.152	46.407	52.486	5.167	10.339

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12056.1	1610	7e-23	7 - 66	98	59 / 60	minus	ABC15000
JLOC1	JLOC1_8053.5	1546	4e-23	1443 - 1502	98	59 / 60	plus
JLOC1	JLOC1_8053.4	1491	4e-23	1388 - 1447	98	59 / 60	plus
JLOC1	JLOC1_8053.3	1541	4e-23	1438 - 1497	98	59 / 60	plus
JLOC1	JLOC1_8053.2	1215	4e-23	1112 - 1171	98	59 / 60	plus
JLOC1	JLOC1_8053.1	1234	4e-23	1131 - 1190	98	59 / 60	plus
Harvest35	U35_20742	1322	3e-25	1245 - 1304	100	60 / 60	plus

Contig Sequence (1322 bp)

>U35_20742 1322 Hv_44K_v2
GTCCCCCGGGCTGCAGGAAAAACGATGCGACAAATGAGCCTCTTTTGTCTGGACCATACT
GGATAATGGTTAACATCAGCAAACAAAAGGGTACATGTGGATGTGGATCCAAAGCAAATT
AAACATATATTGGTTTGACCAAAACTAAGGAGGTCGCACGGCCCAGTTTTGTTGTGATTT
TTCCAAGATATTTGTCAAGTAGCTCCTGGATTGGAAACTGTGTCATGCTTCTGACTTGAT
AAAAATGTTATCAAAATTAGACTCCAAATGCAGCTTGCTGGGCAAAGAGGAAATTTAGTT
GGGATGAAAGGGAAGGGCCTCGATCACTCTACCTGGGATTTGCACCAGCATTGACTAGAT
CCCTCATCTATGGTGGCCTTCGATTAGGACTGTATGAGCCTTGCAAACATGTCTGCAGCT
ATGCATTTGGTTCAACAAACTTTGCTTTTAAATTTGCATCTGGAGTAGTTGCTGGTGCCC
TAGCAACTGCATTGACAAATCCTATGGAGGTTTTAAAGGTGAGGTCACAGATGAGTACAA
GCAGAATTAGTACAATTGGAGTGATGAAGGAAATTGTATCAGAGGAAGGAGTCAAAGCGC
TTTGGAAAGGAGTTGGCCCAGCCATGGTGAGAGCAGGCTGCCTCACGGCATCACAAATGG
CAACTTATGATGAGGCCAAACAGGTCTTGCTGATGTGGACACCATTTGAAGAAGGTCGAG
TTGCATCGCTGGAACGGCTGGTACACTTGTGACTGCACCTATTGACATGATCAAAACAAG
GCTAATGCTGCAACGAGAGTCCAAAGGTGCCAGAGTATACAGGAACGGTTTCCACTGTGC
GTACCAGGTTGTCCTGACGGAGGGTGTAAAATCACTTTATAAAGGTGGGTTTGCCACCTT
CGCAAGGTTAGGCCCTCAAACAGCAATCACTTTCGTCGCGTGCGAGAAGCTGCGCGAACT
CGCTGGAATGTCTGCTATCTAGTACCACGTGAGATTGAAGAAATATACGGTTCAATATTT
GTCTAGTTGGAGGGCATATTTTACTCCATTCATTTATCAGCAGTTTTCCACATTCATGAG
GGTCTGTCAGAATTGTAGCACTGACTTTTGAAAGGATAAAGAAATTGGGCTGCTTCAATG
GTTAGCTTGTAGTACTTGCTACCGATCAGATTTTCTCTTCAGGTCACGAAGTAGCAAGGA
CAGAATAATACTGTAGTACTCTCCATTTTTGATTTTCAGCCTGAGCTTCGCATTGTTTAT
TTTCTTCAGACATTGCAATTTTCCATCCAGATGGTGATTTTTGTCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_20742 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34870.2	290	3e-113	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi4g05917.1	228	9e-79
Arabidopsis v10	AT4G03115.1	314	6e-78	Mitochondrial substrate carrier family protein \| chr4:1383366-1385485 REVERSE LENGTH=314