barSeed - Barley Seed Development Database

Probe CUST_20463_PI390587928

Source Contig U35_27064

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20463_PI390587928	Hv_44K_v2	TTGCTCTCAACTGCAAGATCGCCATGACATCCAAGTTTGATCGGAAGCAATACTTCTACC	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365163	2196	2e-24	547 - 606	100	60 / 60	plus	ABC14141 ABC14502
MLOC	MLOC_70979.1	1083	2e-24	397 - 456	100	60 / 60	minus	ABC14502
JLOC1	JLOC1_47136.2	833	8e-25	465 - 524	100	60 / 60	plus
JLOC1	JLOC1_47136.1	906	8e-25	538 - 597	100	60 / 60	plus
Harvest21	ABC21994	600	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_27064	602	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (602 bp)

>U35_27064 602 Hv_44K_v2
GGGACGCGCCGCTCCACTCCAAGCTCCGGCGACCGCGCCGCCGGGGCCGCCGTATCATCT
CTCCTCCCAGCGGTGAGCAAAGCTGTGGTCCACCCAGTACATTGTGTATTGCAACTCACG
AGAGGCGCATTGCCCACAATGGCTCTAACGCTTCTCCGAGGGATCAGAACGTCAACCTTA
TTTAGAGCAAATTTCAGCCTGTTCTGTACCACTCAACGTCGTCCACTAGCTCACTTCACA
ACTAGAGCGGAGAGTGTGCAGACTACTGAGCCCAAAGCAGTGCCCAAGTCAATTCAACAG
GCTACTAAGGAGGCGGCGGAGCAGAAGACACAAGGTTTTGAATCCGTTATCGGCATTGAG
ACCCATGTCCAGCTCTCGACCATCACAAAGGCATTTTGCTCCTGCCCAAACAACTATGGC
TCGCAGCCTAACACCACTGTTTGCCCCACCTGCATGGGCCACCCTGGAACATTGCCACTT
CTGAATGCAAAGGTTGTTGAATGTGCAGTGAAAATAGGCATTGCTCTCAACTGCAAGATC
GCCATGACATCCAAGTTTGATCGGAAGCAATACTTCTACCCGGACCTACCCAAGGGGTAC
CA

Homology of Contig U35_27064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34210.2	545	6e-75	protein\|aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
Brachypodium v1_2	Bradi4g16830.3	540	5e-90
Arabidopsis v10	None