barSeed - Barley Seed Development Database

Probe CUST_20450_PI390587928

Source Contig U35_15091

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20450_PI390587928	Hv_44K_v2	CATTGATTTGTCTAACAATGACTTATGTGGGACGATCCCCGTCGATGGTCCATTCTCAAG	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361199	4471	2e-24	1733 - 1792	100	60 / 60	minus	ABC02932 ABC05216 ABC05217 ABC05218 ABC14249 ABC47180
MLOC	MLOC_12619.2	1147	2e-24	818 - 877	100	60 / 60	plus	ABC02932
MLOC	MLOC_12619.1	1264	2e-24	787 - 846	100	60 / 60	plus	ABC02932
JLOC1	JLOC1_8471.1	1494	8e-25	757 - 816	100	60 / 60	plus
Harvest21	ABC02932	1244	3e-25	642 - 701	100	60 / 60	plus	ABC02932
Harvest35	U35_15091	1275	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (1275 bp)

>U35_15091 1275 Hv_44K_v2
ACTTTCCCATTTCCACAACCACCCGTCCTCCTCCTCCCACGCCAGAGCAGAGCAGAGCAG
CAGCAGCAGCCCCATCGATCTACTCCGCCCTCCTCTCCCCCGCGCCCGGCCGCTCCTCTC
CTCTCCGCCATGGCGCCGCCTCGCGCGCCCTCCTCCTTCCTCCTCCTCGCCGGCGCCGCC
ATCCTGCTGGGCCTGGCGGCCGGCGCGGCGAGGGCGTCCAACGAGGAGGGGGACGCGCTG
TACGCGCTGCGGATGCGGCTGTCGGACCCCAACGGCGTGCTCCAGAGCTGGGATCCCACC
CTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACAGCGCCAGCCGCGTCGTCCGC
CTGGATTTAGGCAACTCCAACGTCTCCGGCTCCATCGGCCCCGAGCTCAGCCGCCTTGTG
AATCTTCAGTACCTGGAGCTGTACAGGAATAACCTCGACGGCGAGATCCCAAAAGAATTG
GGCAAGCTGAAGAATTTGATCAGCTTGGATCTGTATGCCAATAAGCTCACCGGAAGGATC
CCCAAGTCACTTTCCAAGCTCAGCTCACTCAGATTCATGCGCTTGAACAACAACAAACTT
GCTGGATCAATTCCACGGGAGCTGGCCAAACTCTCCAACCTGAAAGTCATTGATTTGTCT
AACAATGACTTATGTGGGACGATCCCCGTCGATGGTCCATTCTCAAGCTTCCCTCTTCGA
AGCTTCGAGAACAACAGCAGGCTGAATGGCCCAGAGCTGCAAGGATTGGTTTCCTATGAC
TTCGGATGCTAGGAAGCGCCGGCACACACGATAATGCACGTGGAAGGAAGGCAAAAGATT
ATAGTAGTACAACAAATGCTAGGAAGCCTAGCACTACAACATGTCTGACTTGCGAGACAT
GCAGCAGAAGATGAAGAATGTATTGTGAGCGTAGGGTCTGTGTTTGGTTATCAGACCGCA
GAAAGAAAAAATGGGATGTGAGAAGTCTTGCTTGATCGATACAGTTATTGCCGTATTGTA
AATTGTAATAAGCTGCTTAGTACCGCAGCTATGTGGACCGCTTGGGTCCATTAGCATAGC
CTCTGCCAGTTCGGAACTAGAGTTAATCCGAGCTGATGAAGAATGTATCCCATGTTTCAC
ATATCTTTGCTATGTTATTTGTATGATTGAAGTACAAGCATTAGTGCAAAAGAACATGAA
GACTTTGTTCATCAAAAAAAAAAAAAAAAAGTATAGTGGCACAATGTTATGTGACATCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_15091 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g32580.1	219	2e-125	protein\|BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g15850.1	215	1e-123
Arabidopsis v10	AT5G21090.1	218	6e-90	Leucine-rich repeat (LRR) family protein \| chr5:7164758-7166904 FORWARD LENGTH=218