barSeed - Barley Seed Development Database

Probe CUST_20427_PI390587928

Source Contig U35_19166

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20427_PI390587928	Hv_44K_v2	AACTTTTTGCTCGCCGAAGGGTAATATTGGTGTGGACCGGCTAGACATGATTAAAGGATT	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368446	3379	2e-24	1975 - 2034	100	60 / 60	plus	ABC01983 ABC10695 ABC10696 ABC14205 ABC21919 ABC22344 ABC45186
MLOC	AK253005.1	1046	2e-24	825 - 884	100	60 / 60	plus	ABC10695
MLOC	AK371193	5337	2e-24	726 - 785	100	60 / 60	plus	ABC01983 ABC10695 ABC16473 ABC21919 ABC22344 ABC45186
MLOC	MLOC_27011.1	1247	2e-24	839 - 898	100	60 / 60	plus	ABC10695
JLOC1	JLOC1_18286.1	785	8e-25	375 - 434	100	60 / 60	plus
Harvest21	ABC10695	630	3e-25	160 - 219	100	60 / 60	plus	ABC10695
Harvest21	ABC10697	1023	4e-24	385 - 444	98	59 / 60	plus
Harvest35	U35_19166	855	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (855 bp)

>U35_19166 855 Hv_44K_v2
GGGCCGTTCGTGCGCTGAGCAGCCGTGTGAGCTGCAGGAGGAGGCATCGGCTCGCCCTGC
CACGCCCACGCCGCCACTGGGAGGAGCTCGATCCCAACTGCACTGCAAGGACACCACCCA
CTCGGAGGCTGTCCAACTTGTTTCTCAATAGCTCCTTCCTCAACAATTCGTTCCGAGGCA
AAACCCCTGAGGTCATCTCCAATCTCGTGAAGCTGCTTATACGCCCGACGAAAAGTGACG
AGCAGCAGCAGCAGCAGCAATAACATCATGAAGATATCAGGAAGAGCTCGCAGTACCTCT
TGCCATCGAGGAAACTGTCGCTGCAACAGATTCCCGAGGACCAGAAGCCGTCGAGGAAAC
CGTCGCTGCACCTCGCTGTCAGGGAACTTTTTGCTCGCCGAAGGGTAATATTGGTGTGGA
CCGGCTAGACATGATTAAAGGATTCCTGCAAAAGGTGTTGGCCTTTGAGAAATTTCTTGA
GGAAAACGAGGAATTGGATTCTGAATACAAAGTAGTTCTACTGCAGATTGCAGTGCCAAC
CAGAAGTGACGTACCTGAATATCAGAAGCTAGCAAGTCAAGTGCATGAATTGGTTGCACG
CGTAAATGGTCGATTCGGAACACTGAAAGCAACTCCTATTCTACATTTGGTGAAGTACAA
AGCCAAGTGTGAATCTATGAAGTGTATCAACAAAGAGTAGTATATGTATTGTAATAGTAG
GCAGTAGTAGGTATATCTGGGTTGTGGTGTACTGTAAAGATTGTAATAGACAAATTTAAT
GTTGGTTTGGATGAATTTCATTTGCTCCCCATCCTGTTTGAAATATTGATTCTGAATGTG
ATTTGAATACCTATG

Homology of Contig U35_19166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None