barSeed - Barley Seed Development Database

Probe CUST_20336_PI390587928

Source Contig U35_6698

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20336_PI390587928	Hv_44K_v2	ACTCTGTATGTCTGTGTCTGTCAGCGTGTGATCTGAATCTGAAGAAGAAGAAGGAAAGCG	1291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365581	1677	2e-24	1521 - 1580	100	60 / 60	plus	ABC15149 ABC27839
MLOC	AK358920	1181	2e-24	958 - 1017	100	60 / 60	plus	ABC15149 ABC27839
MLOC	AK363391	1626	2e-24	1544 - 1603	100	60 / 60	plus	ABC15149 ABC27839
MLOC	MLOC_22296.1	260	2e-24	93 - 152	100	60 / 60	plus	ABC15149 ABC27839
JLOC1	JLOC1_15452.1	196	8e-25	93 - 152	100	60 / 60	plus
Harvest21	ABC15149	1421	3e-25	1292 - 1351	100	60 / 60	plus	ABC15149
Harvest21	ABC50467	381	2e-21	140 - 192	100	53 / 53	minus
Harvest21	ABC27839	424	2e-21	181 - 233	100	53 / 53	plus	ABC27839
Harvest35	U35_6698	1421	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1421 bp)

>U35_6698 1421 Hv_44K_v2
ATCCCGTCCGCCACTCCCGCCGGCCACTACTCCCGGTCCATTTTTGCCTCCTCCCAGTCT
CCGTCTCTGCGTCACTAGCGCTCGCGCTCGCGCTCGGAAGAGAGAGAGAGAGAGAGAGAG
AGGAGTGGTTGCGCGCCCATCGGCCCCGTACCGCTTGTTGGCTTGCGCCCGCCCTTGTGC
GGAGTGGAGTGGTTGCTGCTTTTGCCCGTCGCCATTGCCGGCGTCGGGGTGCGGGCGGGC
GGGCGGGCGGACTCACCCACGCGCGGGTGACGGGAGTGACGTGACGGCACTCTGCGCGTC
GCCTTGTTATATCCACCCCGCACCGCACCGATCCGATCCTCCTCGGCGGCAGCCAGCGAG
AGGTCCAGACTCCAGAGGCCCGAGGGTGAAGGAAGAGCGGGGAATTTCGTACGAGCGCGT
GGCCGGCCATGGACGCGCCCTTCTTCCACGAGCTCCGGCGGCAGGCCTCCTCCTACCTCA
CCGGCAAGATCCGCTCGGCGCGGCTCGCGCTCACCGACGTCACACCGACGCAGCTGATGA
CGGAGGAGGCGACGAACGGGGACGCATCGCCGCCGAGCGCCAAGACGATGAGCCTCATCG
CGCGGGAGGCCTTCGAGATCGACGAGTACCTCAGGATCTCCGACATCCTCCACAGCAGGC
TGGCGACGTTCGACCGGAGGCAGTGGCGGGAGCCGTACAAGGCGCTGCTGCTGCTGGAGC
ACCTCCTGACGCAAGGCCCCCGCAGCGCCGCCCTGGAGTTCCAGAAGGACCGGGCCGTCA
TCCAGCAGATGGCCGCCTTCCAGCACATCGACGAGCGAGGTTTCAACTGGGGCCTGACGG
TGAAGGGCAAGTCGGAGCGGGTGCTGAAGCTGCTGGAGCGGGGCCCGTTCCTGGAGGAGG
AGCGCGAGCGGGCGCGCAAGGTGGCGCGCGAGATCAAGGGCTTCGGCAGCTTCAACCTCA
GCAGCAGCGGCGGCGGCGGCGGAAGCTCATCGCGCGCGGCGCCGCAGACGTACGGGCGCA
GCCACTCGCGGTACGAGGACCGGCCGTGGAAGGCGGAGGACGGCGAGGAGGAGGACAAGG
AGAACCTGGTGTCCCGGCCCGACCCGAGGAGCGCGCGCGAGGAGGCGGAGGAGCGGCACC
ACCGCCACCCGTTCCACGGCTTCGCGCAGCAGCGCCAGCCGGAGGCGATGCTGCTGCTCA
GCCAGTGACCGAGGCTCGCCGCCGCCGCTGCTCAGCCAGTGATCGAGACTTGGGAGAGGG
ATGAGCGCCGTCGCCTCCCCCCCTGAACTGTACTCTGTATGTCTGTGTCTGTCAGCGTGT
GATCTGAATCTGAAGAAGAAGAAGGAAAGCGCGTGCGAGGTCAGTGGTTTGCTGACGTTG
CCGAATGCTTAGCTCTGTTTTTCCCAAAAAAAAAAAAAAAA

Homology of Contig U35_6698 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62370.1	269	2e-96	protein\|ENTH domain containing protein, expressed
Brachypodium v1_2	Bradi2g54607.1	256	5e-117
Arabidopsis v10	AT3G46540.1	307	2e-53	ENTH/VHS family protein \| chr3:17134204-17135411 REVERSE LENGTH=307