barSeed - Barley Seed Development Database

Probe CUST_20311_PI390587928

Source Contig U35_11728

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20311_PI390587928	Hv_44K_v2	GAGCACTTGATGATTATGCTGTAGATAACAGAGGAGATGTGGGTTCTTGGGTACGTGAAG	367	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36476.6	2959	2e-24	1499 - 1558	100	60 / 60	plus	None
MLOC	MLOC_36476.2	7879	2e-24	6323 - 6382	100	60 / 60	plus	ABC08802
MLOC	MLOC_36476.3	7874	2e-24	6318 - 6377	100	60 / 60	plus	ABC08802
MLOC	MLOC_36476.5	4726	2e-24	2969 - 3028	100	60 / 60	plus	ABC08802
MLOC	MLOC_36476.1	7879	2e-24	6400 - 6459	100	60 / 60	plus	ABC08802
JLOC1	JLOC1_23489.2	4200	8e-25	2740 - 2799	100	60 / 60	plus
JLOC1	JLOC1_23489.1	4421	8e-25	2961 - 3020	100	60 / 60	plus
Harvest21	ABC23519	428	3e-25	368 - 427	100	60 / 60	plus
Harvest35	U35_11728	430	3e-25	368 - 427	100	60 / 60	plus

Contig Sequence (430 bp)

>U35_11728 430 Hv_44K_v2
GACGCTTTGAAGCATTTTATTCCAACATATCTGGTTTCTGCTGGTGAAAAGATTGCTCAT
GATGTCATTTCGAAGTATGTGACGCTTCTAGATGACCCGAATGTAGCTGCAAGACGGCGG
GGCGCTGGCCCTTGGAATATTACCGTACGAGTTCTTGTTATTAAAATGGAGGCCTGTCAT
GAGTAAGCTCTGTAGCTCATGCACAATAGAGGATAAGGCTGATGATCCTGATGCTGAAGC
ACGTATGAATTCTGTTAGGGGGCTAATTCTGGTTTGCGAAACATTAACATCTAATGTTGA
TCAGAGCTCAGATATTGGAGAATCTGTATATGCATACATAAAAGTGAGGTCATGCCAGCT
TTATTCAGAGCACTTGATGATTATGCTGTAGATAACAGAGGAGATGTGGGTTCTTGGGTA
CGTGAAGCAG

Homology of Contig U35_11728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36490.1	1140	2e-56	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g30790.1	1168	1e-60
Arabidopsis v10	None