barSeed - Barley Seed Development Database

Probe CUST_20242_PI390587928

Source Contig U35_2262

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20242_PI390587928	Hv_44K_v2	AAACAAATTTCTCAATCACAACAAGCACTTTCTCTTTCGAGTGGACGATTTGCGAAAAAA	737	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58483.1	1230	3e-21	984 - 1037	100	54 / 54	plus	ABC05839 ABC44739
JLOC1	JLOC1_38002.1	1068	2e-21	903 - 956	100	54 / 54	plus
Harvest21	ABC05839	808	3e-25	738 - 797	100	60 / 60	plus	ABC05839
Harvest35	U35_2262	808	3e-25	738 - 797	100	60 / 60	plus

Contig Sequence (808 bp)

>U35_2262 808 Hv_44K_v2
GCCGGCGCCACCACGGGCCGGACGGCAACGGCGACACGCACACGCACGCACGCACACACA
CTCACTCCACGCTCGGCCAGCACAACAAGCAAGTTCAGTTCAGGTTGGGGGATCGATCGG
ATAATGGCGCCGGCGCCGGTGGAGTTCGTGGGCGCGAGGGAGGCAGGCGGGGTCGGCGGG
GACGCGCTCTACTGCGCCATCATCCTGTGGCTGTCCGTCATGTCGTGGATCATCTTCACC
TGCGTCGGCGGCGACGACGGCGGGAGGCGCGGGAGGAAGGGCCGCCGGGACACCAAGGTC
TTCGTCGGCGCCGAGCGACTCTGCGACGGCACCGGCCCGCGCTGCAGCGGCGGCTACGGC
CTCTGCGGCTCCTGCGTCGACTAGCCTGCCGCCGCCCGCCCGGCTCCTCCAAATCGTACG
TTTGGTTGGTCGGTAACTTCGTGTAATCGGGCGTCAAAAAGTAGTATGATCATCTACTAG
TATCTATGGTGTGATGAACAACTCCTTTTCTCATGCGAGCTTCTTGCAGCCTGTAAATAG
TTTTAGCGATCGATGATCGATGAGATGAGATGAGATAGTATGATCTGGTATTAGTAAAAA
AAAAAACTCCCCTTTGTGAAGACAATAAGAGGGAGCTAGCAGCGTCTTCCGTCTGATCCT
GGTTCCCGGTTTGGCTGCAACCTGCAAGAACTAGTCTCGATTCTTCATCTTCTTCTCGTT
CTCGCTCGATCATGCGCAAACAAATTTCTCAATCACAACAAGCACTTTCTCTTTCGAGTG
GACGATTTGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2262 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None