- Probe CUST_2022_PI390587928
- Source Contig U35_46743
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2022_PI390587928 | Hv_44K_v2 | GATCAATCTGATCACTTGTGTAGCACACTTCACTATTTTGAAAAAGGAAATTACTCCCAA | 15 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.217 | 1.498 | 0.789 | 1.341 | 0.911 | 0.648 |
| Raw | 25.261 | 27.222 | 12.587 | 34.102 | 7.442 | 5.512 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57254.8 | 1958 | 6e-24 | 1831 - 1889 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.9 | 1958 | 6e-24 | 1704 - 1762 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.1 | 3652 | 6e-24 | 3422 - 3480 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.7 | 2663 | 6e-24 | 2427 - 2485 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.3 | 3179 | 6e-24 | 3002 - 3060 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.2 | 3769 | 6e-24 | 3591 - 3649 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| MLOC | MLOC_57254.4 | 3491 | 6e-24 | 3237 - 3295 | 100 | 59 / 59 | plus | ABC07811 ABC09965 ABC43005 ABC47240 |
| JLOC1 | JLOC1_37075.1 | 2158 | 3e-24 | 1872 - 1930 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC47240 | 352 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | ABC47240 |
| Harvest35 | U35_46743 | 352 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus |
Contig Sequence (352 bp)
>U35_46743 352 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGAGTAATTTCCTTTTTCAAAATAGTGAAGTGTGCTACACAA GTGATCAGATTGATCCAGTCTTCCAATCACAGGTCAATTAGAATTGCTCTGCTTTGTTAA CCATCACACCATCCCTTTCACATTCACTTGTGCTCTCCTCATGCTCCAGGCCCTGAGCTG TGGCACCCTGACCGTGGTACTGCCGTTGTTGAAGGCATACATGTGGGCCACACCGTCGAC AACCGCCACGGGGTACACTCTGGCCATGATGCAGACCCTGCCGCCACCGCCGAAGCTCTC CACCGCCGACCGATCAATCAGAGTTCTCAGAGATATCTTCTTTTCTTTTTCA
Homology of Contig U35_46743 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |