barSeed - Barley Seed Development Database

Probe CUST_20203_PI390587928

Source Contig U35_17002

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20203_PI390587928	Hv_44K_v2	GTCTTTGTCCTGTGAATGTGATTTGCAGAAGGAAAGACATAAGTTAGCTGATTTTTTCAA	2584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21120.2	1543	2e-24	1458 - 1517	100	60 / 60	plus	ABC06592 ABC06593
JLOC1	JLOC1_14652.1	1539	8e-25	1438 - 1497	100	60 / 60	plus
Harvest21	ABC06592	1312	3e-25	1238 - 1297	100	60 / 60	plus	ABC06592
Harvest35	U35_17002	2659	3e-25	2585 - 2644	100	60 / 60	plus

Contig Sequence (2659 bp)

>U35_17002 2659 Hv_44K_v2
CACTAGTGGATCCAAAGATCGCCGACTCCCGTACCGTCCTCTTCCCCCCTCCGCGTCCGC
ACCCCGCCCCCCGCGCCCGCGCGTCCTCCTCCTCGCCGCCGCCGCCGCCATGTCGGGCTG
GGACGAGGGCGCCGTCTTCTACAGCGACCAGGCGCAGTTCCCGCAGGGCGACCCCGCCGC
CGCCGACATCACCCGCCACTCCGCCCTCCGCAAGTTCAAGGAGTTCCTCCGCGGCTTCAC
CGGCCCCACCGGCGACTTCCCCTACCGCGAGAGCCTCGTGCACAACCGCGACCATGTCAC
CGTCGCCATCGAGGACCTCGACGCCTTCGACGCCGAGCTCGCCGACAGGATCCGCAAGGC
GCCCGCGGACTACCTGCCGCTGTTTGAGACGGCTGGGTCCGAGGTTCTCGCCAGCCTTAG
GTCGAAGGTCGCCGGCGAGACTGGGGAAATGGAGGAGCCTGTCACCGGCGATGTGCAGAT
CTTCCTCTCCTCCAAGGAGAATTGCGTCTCCATGAGATCTATTGGGGCAGATTACATGTC
GAAATTGGTGAAGATTGCGGGTATTGCAATTGCCGCTTCGAGGGTGAAAGCCAAGGCCAC
TCATGTGACTCTGCTCTGCAAGAACTGCAGGAGTGTGAGGACTGTGCCGTGCAGGCCAGG
CCTAGGTGGCGCTATTGTCCCACGGTCCTGTGATCATGTTCCTCAGCCTGGAGAAGAGCC
TTGCCCCCTGGACCCCTGGATTGCAGTCCCTGACAAGAGCAAGTATGTGGATCTACAGAC
TCTCAAATTGCAGGAAAATCCCGAGGATGTTCCAACCGGTGAGCTTCCACGGAATGTGCT
GCTTTCTGTAGACAGACATCTTGTTCAGACAATTGTTCCAGGAACTAGATTAACTGTGGT
TGGCATCTACAGTGTATTCCAAGCATCTGGGACAAACAACCAGAAAGGTGCTGTTGGAGT
TAAACAGCCCTACATTAGAATTGTGGGGTTAGAGCAGTCTCGAGATGACAACACAAATGG
ACCCTCACATTTCACACTCGATGAGGAAATGGAATTCAAAGAATTTGCGCAGAGGCCAGA
TGCATATTCCAAGATTTGTTCAATGATTGGCCCTTCAATTTATGGTCATGGTGATGTCAA
GAAAGCTATTGCGTGCCTTTTGTTTGGGGGATCAAAGAAGAGGCTACCAGATGGTGCCCG
TTTGAGAGGGGACATTCATGCCTTGCTCTTGGGTGATCCATCCACAGCAAAATCCCAGTT
TCTCAAGTTTGTAGAGAAGACGGCACCAATTGCAGTCTATACCTCTGGAAAAGGTTCATC
TGCAGCTGGTCTTACAGCATCTGTAACCCGGGATAGTAACTCGCGTGAGTTTTATTTGGA
AGGAGGGGCCATGGTATTGGCTGATGGTGGAGTGGTTTGTATTGATGAATTTGACAAAAT
GAGGCCTGAAGACAGGGTTGCAATTCATGAGGCCATGGAGCAGCAGACCATATCTATTGC
CAAGGCTGGCATTACAACAGTACTCAATTCGAGGACCTCAGTTCTTGCAGCTGCCAATCC
AATTTCGGGCCGGTATGATGATCTGAAGACCGCACAAGATAATATAGATCTGCAGACAAC
AATCCTTTCTCGGTTTGATCTAATCTTCATAGTTAAAGATGTCAGAATGTATGAGCAAGA
TAAGCGAATAGCAAATCACATCATTAAGGTGCATGCCAGTGGTGCTGCAACTCAAGCAAA
CAAGAATGCAGATGTCAATGAAGGAGAGAATTGGCTGAAAAGGTATGTCGAGTACTGCCG
CAACACATGTAGACCACGACTCTCAGAAAAAGCAGCAGAGATGCTGCAGAACAAATATGT
TGAGATCAGACAGAAAATGAGACAACAATCCCACGAGACAGGAAGAGCTGCAGCCATACC
CATCACTGTGAGGCAGCTTGAAGCTATTATACGGTTGAGCGAATCTCTTGCAAAGATGAG
ATTGACTAGTGTGGCTACGCCAGAGCACATCGAAGAGGCATTTAGACTGTTCAATGTCTC
CACCGTTGATGCCGCAAGATCTGGAATCAACGAGCATCTTAACTTGTCACCGGAGATTGC
AAATGAAATCAAGCAAGCCGAAGCGCAGATAAAAAGAAGGATGGGAATTGGGAGCCACAT
ATCTGAGCGACGGCTGCTCGATGAACTGAATCGGATGGGGATGAACGAATCCATTGTGAG
AAGAGCCCTTGTGATTATGCACCAGAGGGATGAAGTGGAGTACAAGAGGGAGCGCCATGT
GATTGTCCGCAAGGCTTGAGCTGAACCGAACCATGGAACTATCTGATGTGTGTGTATAAG
TAGTGCTGACACTGCAGCCTGTTTCATGAGGAAATTTGTTGCATCGTTGAAATTGAGTTG
TAGTAGTTGTACTACTTTAAGCTGTAACTGTAGCCCTAAATTATCTTGTGTCGAACTGAA
GATGTACCACAGTAAGTTCATTCATGAGTGCAACATTTGGGCGTTCTGCAGCTGAGCAGA
GTCTATGCCTGGGAAACTCAAACTTGCTCTTTGCCCTGCATTGTTTTGCCGTCAGATTTC
GCCTGTCTTTGTCCTGTGAATGTGATTTGCAGAAGGAAAGACATAAGTTAGCTGATTTTT
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17002 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g55410.1	730	protein\|MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed
Brachypodium v1_2	Bradi3g54190.1	734
Arabidopsis v10	AT2G07690.1	727	\| Symbols: MCM5 \| Minichromosome maintenance (MCM2/3/5) family protein \| chr2:3523379-3527388 REVERSE LENGTH=727