barSeed - Barley Seed Development Database

Probe CUST_20191_PI390587928

Source Contig U35_17010

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20191_PI390587928	Hv_44K_v2	AATCGGGTACACCATCACAGCATCCATCAGTGCCGCGGCTTTGTACAAGGCCCACTGCTT	507	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361903	1735	7e-23	544 - 603	98	59 / 60	plus	ABC14547 ABC26356
MLOC	MLOC_7424.1	1556	7e-23	1159 - 1218	98	59 / 60	minus	ABC14547 ABC26356
JLOC1	JLOC1_4893.1	1678	4e-23	338 - 397	98	59 / 60	plus
Harvest35	U35_17010	596	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_17010 596 Hv_44K_v2
TCGAGCACTGTTGGGCTACTGGATCGCTGTGCACGCGCAGCACCAGTCTAGCGCTAGCGC
AGCGCAGATGGCCCGGGCAGGCGGCGGCGGCGGCGGCGGCGGCGGCGATGTCGAGATCGG
GGGGCTTCCGGCGCCGGCGGGGGACCTGAGGCGGCGGGTCATCGCCGCCGCCGACGACTA
CTCCCTCGACGACGACGGCAAGCCCAGGAGGACAGGGACGGTGTGGACGGCGAGCGCGCA
CGTGATCACGGCGGTGATCGGCTCCGGCGTGCTGTCGCTGCCCTGGTCCGTGGCGCAGCT
CGGATGGGTCGCCGGGCCCGCCACGCTCCTCCTCTTCGCCCTCATCACCTACTACACCTC
CGTGCTCCTCGGCGACTGCTACCGCAGCGACGACGCCGTCGCCGGGAAAAGGAACTACAC
CTACATGGACGCCGTCGGGTCCCTCCTAGGTAAAGGGCAGGTGTGGTTTTGTGGCCTCTG
TCAGTACGTCAATCTTGTTGGGACTGCAATCGGGTACACCATCACAGCATCCATCAGTGC
CGCGGCTTTGTACAAGGCCCACTGCTTCCACAGCAAGGGCCACTCTGCCGACTGCG

Homology of Contig U35_17010 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g12330.1	485	2e-76	protein\|amino acid transporter, putative, expressed
Brachypodium v1_2	Bradi1g45180.1	489	2e-83
Arabidopsis v10	AT1G10010.1	475	2e-60	\| Symbols: AAP8, ATAAP8 \| amino acid permease 8 \| chr1:3265976-3268726 FORWARD LENGTH=475