barSeed - Barley Seed Development Database

Probe CUST_20179_PI390587928

Source Contig U35_17016

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20179_PI390587928	Hv_44K_v2	TGTGGATGGTATGTATTTGACATCAATTTCTAGCAGCACTTGATTCACTTGTTTTTAAGC	2381	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.386	1.350	0.889	0.295	0.194
Raw	686.554	1175.745	1004.635	1032.048	121.360	86.518

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60294.2	2465	2e-24	2403 - 2462	100	60 / 60	plus	ABC07126 ABC39121 ABC39251 ABC41063
MLOC	MLOC_60294.1	2032	2e-24	139 - 198	100	60 / 60	minus	ABC07126 ABC39251
JLOC1	JLOC1_39305.2	2716	8e-25	2505 - 2564	100	60 / 60	plus
JLOC1	JLOC1_39305.1	4604	8e-25	4393 - 4452	100	60 / 60	plus
Harvest35	U35_17016	2457	3e-25	2382 - 2441	100	60 / 60	plus

Contig Sequence (2457 bp)

>U35_17016 2457 Hv_44K_v2
TCTGCTCCCCCACAACAGCGCGCTTCTCGCCACCACCACCCTAACCCTAGTTCCCCCGCC
GCCATGGCCGACGACCACTACTCCTCCAAGCGCAAGTACGACGACTCCCCGCCGCCGCGC
CGCACGGGATTCTCCTCCGGCCCACCGCCTGCCTCGCCGCCGGTTGCCGGTGGCCCGGTG
CCATCTTCGTACAATACTGTGCCGCCGCCTCCCGACGAGATCCAGCTCGCGAAGCAACGC
GCGCAGGAGATCGCAGCTAGGCTCTTCAGCGCCGCTGAGGCGAAGCGTCCCCGTATAGAC
AACGGCGACGACGACGTTGGCACCGGTGGCGGAGGAGGTTCCCTGGGGGGCGGTGGCCGT
ATCGGTGGCGGCGGCCTCGGATTCTCGTCCTCAGCCGGTGGTGGCCATGGTTCTTCCCTC
CCTCCCTTATCTTCTCAAGGAAACTCGCATCAGTATTCTTCATATGGTGGTGGATACCAG
AGTGGTAGTACAACAAAAAAGATTGATATCCCAAATGGAAGGGTTGGTGTTATCATTGGC
AAAGCTGGAGAAACTATAAAGCATCTCCAAGCTCAGTCAGGGGCAAAGATCCAAGTAACA
AGGGACATGGATGTTCAACCTGGCTCACAGACAAGATCGGTTGATATTTCGGGCACTCCT
GACCAGATAAGCAGAGCTGAGCAGTTGATAATTGATGTTCTTGCAGAGGCTGATGCTGGA
TCATCTGGCACTATCTCTAATCGGAAGTACAACGCACCTCAACCTGGTGCTGAGCAATTC
CAAATGCAAATTGCTAACAACAAGGTCGGTCTGGTTATTGGTAAGGGTGGTGAGACTATA
AAATCCATGCAGGCCAAATCTCAAGCTCGTATACAGGTCATTCCTTTACATTTGCCTCCT
GGTGATACTTCAACTGAAAGAACACTGTATATTGATGGTACTGCAGAGCAAATTGAAATA
GCAAAGCAGCTTGTGAGTGAGGTTACCAGTGAGAATCGTGCCAGAAATCAAATGTCAGGT
GGCTATTCTCAGCAGGGCTACCGCCCTCCTCGTCCTCAGGCCAACTGGGGCGCGCCTGGT
GCACCAACAACACAACAGCCTGGTTACGGTTACATGCAGCCTGGAGCTTATCCTGGTGCA
CCACCACAGTATGGCCAGCAACCTTATGGCAGCTACCCTCCAGCATCTGGAGGGTATCAG
ACAGGGTGGGATCAGTCTTCAAACCAGCAATCACAGCAGCCCCCCCCTGGCACTGGCTAT
GACTACTATAACCAACAACAGCAACCACAACAGCAACAATCTGCCACTGGAACTGCTGCA
CCTGCTGATGCTAACAACTACAATTACAGCCATCCTCCTGCTAGTTATGCTTCACAAGGG
TATGGTGATTCTACCTACTCCCAGCAGAGTGGCGGGCAGCAAGCTTATGACTACTCTGGT
TACCAGACCCAAGGGCAGCAGCAGTCTTACTCACAGCAGCCTGGATATGATCAGCAGAGC
TATGGGGCATCTGGCTATGGATCAGCTGCTAACTCAACTCAGGATGGCACTGCACCGAGC
TATGGTGGTCCAGGTGGCGCTGGTCAAGCATCTCCAGGGCAGCAAGCTTCAACTCCTTCC
ACCGGAGGCCAACCGGGTTATCCTAGCCAACCACCTGCTAGTGCTGCTGCATCAAGCTAC
CCGGCGCAAGGTTCTGCCCCTCCATCTGGATACGTTGCTCCACAGACACAGCCTGGCTAT
GGTCCGCAGCCACCACAACAGGGCACGTATGGTCAGGGTGGTTATGGGCAGCCGCCTCTA
CAGGCTCAGAAGCTGCCTTCATCTGCTCCTACTTATGGACAGGCACCGCCTGCTCAGGCT
GGATATGGGCAGTATGGATACAGTCAGCCAGGCTATGGTGCTCCACCGCCTTACCCTGGT
GCACCTACTGCTAGCCAGCCAGGCTATGGCCAGCAGCAGTCATACGGTGATCCTTATGCT
ACTGGTAGCTATGGGCAGCCTACTGCTTATTCTACTGAAGCCACAGCACCTGCTGCGTCC
CAGGATCAATCTGCCGCCGCACCTGCGCCTACCACAGCAGCTGCCGCTCCTGCTACTGCC
AACAGTGGTGCCCCCCAAACTTCTCCGAGTTGAGCTACCTGCCTCAGCTGCATCTGAAAT
CTGGTTTCCTTGGCTCTGCTGCTTGAAGTATAATCCTCAGTTTACCCATGTTATCTTACT
GATTGCTTTATTGTGAACTTTATATATTGCTATATTATTATCCTTGTTTTGCTGCTCTCG
AACTCGAACTGCTTGTGATCTCTGGTGCAACCTATACTAGGTTTGGATAATCTGAAATGC
AACTGTATTCAATTTTGCTGCTTAACGTGTTGTTGTAGTTATGTGGATGGTATGTATTTG
ACATCAATTTCTAGCAGCACTTGATTCACTTGTTTTTAAGCTGAAAAAAAGAAAAAA

Homology of Contig U35_17016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13130.1	700	9e-161	protein\|KH domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi3g08410.1	693	0.0
Arabidopsis v10	AT2G25970.1	632	2e-79	KH domain-containing protein \| chr2:11071844-11075604 REVERSE LENGTH=632