barSeed - Barley Seed Development Database

Probe CUST_20164_PI390587928

Source Contig U35_2088

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20164_PI390587928	Hv_44K_v2	CAGACAATGCTTTGTAACGGTTGCCTCTACAATTGTATATAGACCTGTCTTCGTATCAAA	1188	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.270	1.597	1.055	0.863	0.351	0.356
Raw	4203.620	8012.927	4774.977	6125.343	877.087	971.724

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252139.1	1234	7e-23	1178 - 1234	100	57 / 57	plus	ABC05498
MLOC	MLOC_34989.1	923	7e-23	839 - 895	100	57 / 57	plus	ABC05498
JLOC1	JLOC1_22608.1	785	4e-23	591 - 647	100	57 / 57	plus
Harvest21	ABC05498	1313	3e-25	1189 - 1248	100	60 / 60	plus	ABC05498
Harvest35	U35_2088	1314	3e-25	1189 - 1248	100	60 / 60	plus

Contig Sequence (1314 bp)

>U35_2088 1314 Hv_44K_v2
GAGAAGCCTGACGTCGACAGCAGTTCGTCGATAAAGAGGCATTTCTGCAGAAACCTCGAA
ACCCCGCGACCACCGCCTTGCCGCCTGCACAACCGAGTGCGCTGACCGACGACGCCTCCG
CCACCGCCTCTAGCCCCTCGCCGCGGTCGACCGACGCCCACAGCGTTACGATGGTGACTG
ACGCGGCCGCGTTGGCGGTCGTGAAGGCCGCGCGCCCCGTCTTCCGCGGCGCCCACGATG
GCGTCGCGTTTGCCACAAACGCCGCGTTCCTCGCCGCTGGATACTCTCTCTGCGCCGTTG
GTCCTGCCGCGCTTACCGACCCCCTGCCCGCAGTTGACGATGAGGTGGGAATTGATGGGT
GGAACAGTATGGATAATTGCTATGCCTTTTTGTACTCCAAGGAGGAGGAGGGCAAGAAGA
AGCGCATTTTAGTGAAATGTCTAGTGATTGATGACTTCCTTGCTATTGATGCGCTGGATC
TTGAGGCACAACACAAGGAACCCTGCAATGTCCAGATAAATGTGAAGGATTTCTTCTCTG
AAGAACAGCCCAAGAATTACAAGGATATGTACAAGAATTTTGCGGGCTTCATTAATACCC
TTAACTCAAGCTTATTGGTTGAATTGGATGGTAAGGATGCTGCTGCTGCCCAGAAGCCTG
ATGTTGAGAGCAGTTCATCAATAAACAGTTCTGAAAATGTTCTGCGGGATGCAAGGACTA
CCGAACCTGCTGGCCTGATTTATCCTCCAGTAGCTCCGTTTGGTCATGATGACACCTTCC
CTGCTCCTGGTGCAGGTTTCTACCCTCACAGTGGTGGTGCGGGTGGTAGTATGCACGTTG
GTCCAAATGATCCACGCTTCTTCCCTTCAAATCCTTTTCCTGCTCCTTTTGGTGGCCCTG
GGAGTGTTCCACCTGGTGGCCGTTACGATCCAATTGGCCCGCCCGATGTTCCAGGATTTG
AACCATCTCGCTTTGTAAGGCGTTCGAGGCATCCAGGTGGAAGCACTCACCCAGACCTCG
AGTTCTTCCAGCAAGGCCCAGACTTCTGAGACTCAGCTTCATACCAACCTCCACCTGCAC
CCTGCGCTGAATGACTCTGCTTTGTTTCTGCTGTGCTCCTGAACTTTGTTGCAGTAGACC
CTGCTTGGGAAGTTGGGAACATGAACGTAAACTTCTGTGTTCACCTTCCAGACAATGCTT
TGTAACGGTTGCCTCTACAATTGTATATAGACCTGTCTTCGTATCAAAAAAAAAAAAAAA
AACTGTGCTTCTTACCTAAACTACTATTGGTGCGTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_2088 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36420.1	293	4e-112	protein\|proteasome inhibitor-related, putative, expressed
Brachypodium v1_2	Bradi1g25260.2	297	1e-129
Arabidopsis v10	None