barSeed - Barley Seed Development Database

Probe CUST_20163_PI390587928

Source Contig U35_2089

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20163_PI390587928	Hv_44K_v2	CAATATATTCTGTGGGAAAGCCGGAGTACAAGGATGATTGAACCTGCCGGACTGATTTAT	740	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67735.1	1529	2e-24	1012 - 1071	100	60 / 60	plus	ABC05498
MLOC	MLOC_67735.2	1479	2e-24	994 - 1053	100	60 / 60	plus	ABC05498
JLOC1	JLOC1_44748.4	1414	8e-25	851 - 910	100	60 / 60	plus
JLOC1	JLOC1_44748.2	1527	8e-25	961 - 1020	100	60 / 60	plus
JLOC1	JLOC1_44748.1	1524	8e-25	958 - 1017	100	60 / 60	plus
Harvest21	ABC05499	932	3e-25	741 - 800	100	60 / 60	plus
Harvest35	U35_2089	932	3e-25	741 - 800	100	60 / 60	plus

Contig Sequence (932 bp)

>U35_2089 932 Hv_44K_v2
CCGCAGTACTCTCCGCCCTTTCCCCGACGTCTCCGACCCCGCATCACTGCCTCCGCTGGA
CGCCCGATCCGCCTTCGCTCCCTACGTTGCTCGCCGCCGGATCCACGCCTGGTATTTCTC
CAGCAACCCCGCGACAACGCCGCGCGACGCCCACGAGCGTTAGGATGGTGACCGCCGAGG
CCGTGATGGCGGTCGTCAGGGCCGCCCGCCCCGTCTTCTGCTGCGCCCACGACGGCGTCG
CGTTCGCTGCAAACGCCGCTTTCCTTGCCGACGGATACTCCCTCTGCGCCGTCGGTCCTG
CCGCGCTCATCAACCCCCGGCCCGCAGAAGAGGAGGAGGTGGGAATTGATGGTTGGAACA
GTATGGACAACATCTATGCCTTTTTGTACTACAAGGAGGACGATGGCAAGAAGAAGTTCA
TTTTAATGAAATGTGTGGTGATTGCTGACTTCCTTGCTATTGATGCGCTGGATCTTGAGG
CACAACACGAGGGGCGCTTCATTGTCCAGATAAATGTGAAGGATTTCTACTCAGAAGAAC
AACACAAGAATTATAAGGATATGTACAAGAATTTTGTGTGCTTGATTAATATCCTTAACA
CCACCTTATTGGTTGAATTGGGTCGTAAGGATACTACTGCTGTCCAGATACCTGATGTTG
AGAACAGTTCGTCAATGAGCAGTTCTGGAAATTTTACATGGGAAAACCCAAGTACAAGGA
CAACTGAACCAGCCGGTTCTCAATATATTCTGTGGGAAAGCCGGAGTACAAGGATGATTG
AACCTGCCGGACTGATTTATCCTCCGGTAGTTCTGGTTGGTGATGATGACACCTTCCCTG
TTCCTGGTGTAGGCTTGTACCCTCACAGTGGTGAAACCGGTGGTAGTATGCACGTTGGTC
CAAATGATCCACGCTTCTTTCCTACAAATCCT

Homology of Contig U35_2089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36420.1	293	2e-83	protein\|proteasome inhibitor-related, putative, expressed
Brachypodium v1_2	Bradi1g25260.2	297	1e-91
Arabidopsis v10	None