barSeed - Barley Seed Development Database

Probe CUST_20054_PI390587928

Source Contig U35_37885

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20054_PI390587928	Hv_44K_v2	TATCTAATGCACAGTCTGTGCTGAAAGAAAGCAATACCAATACAGCAGAAATAAGGACAA	64	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355067	2364	2e-24	1365 - 1424	100	60 / 60	plus	ABC15311 ABC21627
MLOC	AK365060	1085	2e-24	45 - 104	100	60 / 60	plus	ABC15311 ABC21627
MLOC	MLOC_54766.1	1725	2e-24	816 - 875	100	60 / 60	minus	ABC15311 ABC21627
JLOC1	JLOC1_35269.1	2205	8e-25	1049 - 1108	100	60 / 60	plus
Harvest21	ABC33633	193	3e-25	65 - 124	100	60 / 60	plus
Harvest21	ABC15311	1640	3e-25	1334 - 1393	100	60 / 60	plus	ABC15311
Harvest35	U35_37885	193	3e-25	65 - 124	100	60 / 60	plus
Harvest35	U35_5591	2348	3e-25	1344 - 1403	100	60 / 60	plus

Contig Sequence (193 bp)

>U35_37885 193 Hv_44K_v2
TGCGCTCAACCAAGTACACATAGGGGAGATATAAAAGACAATAAGCTACCAAGTCCCGCC
AGATTATCTAATGCACAGTCTGTGCTGAAAGAAAGCAATACCAATACAGCAGAAATAAGG
ACAANGCTCCCAGCTGTTGATCTGGCTTTACCGGGCTATAACAATGNGAAGGCTTNTTNT
GACAACAAAAAAG

Homology of Contig U35_37885 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None