barSeed - Barley Seed Development Database

Probe CUST_20014_PI390587928

Source Contig U35_8806

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20014_PI390587928	Hv_44K_v2	GGGCCTCTCATCGACCGATGAACACATCCATTTTTATTATATTATTTAAGAATCTGACAA	590	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.528	0.504	1.311	2.143	1.054	1.071
Raw	12.659	17.194	42.460	109.413	18.229	20.589

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72047.1	2671	2e-24	16 - 75	100	60 / 60	minus	ABC18687
MLOC	MLOC_72047.2	2205	2e-24	15 - 74	100	60 / 60	minus	ABC18687
JLOC1	JLOC1_47925.2	2216	8e-25	2117 - 2176	100	60 / 60	plus
JLOC1	JLOC1_47925.1	1669	8e-25	1570 - 1629	100	60 / 60	plus
Harvest21	ABC18687	670	3e-25	591 - 650	100	60 / 60	plus	ABC18687
Harvest35	U35_8806	670	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_8806 670 Hv_44K_v2
GGCTGAGGAATTCGGACGAGGACACGCCCAGCTGCTCCGGCTTCTCCTCCACCTCCTCCG
GCTGCCCCTGCTGCTGCCGCTGCTGCAAAGCAACGGCCGCTCTCACCCTATGCAGCGTAC
GAGGGGTTGAAGCCACCGTCTTCCCCAACCCCCAGCAGGAGCAGCAGCAAGAAAAAGGAC
GACGGCGATTCTCCTTCGCCACCGCCCTCCGCCGCCTCTCCGGATGCGGCGACTACCACC
ACCACCGCCGAGGCTGCAGCCGAGTCGTCGTCGCCGCTGTTGGATTCCAACGCCAATGGC
GTTCCTCCCACCGCCGCCCCTGCCACTGCTGATCCAGGGCGCCCGCTTTCACCATACGCC
AGGTACGAAGACCTGAAGCCTCCAACCACGCCAACTCCATCCGCGCCAAAAGTATAGAGC
GGCCGGCCCGGCGGTTACTTTCATTTACCTTTTCTTTTCCTGCTCGATCGGCGGCCTCTG
CCCGAGCGCGAGCTCAAGGCACGTGTATATGCCAATTTTCCTTCTTCGAGAAAATACCAA
TGTACACGAGGATGGCAAGATGCATATTTTTTTTCCCGAAAAGGAGTCCCGGGCCTCTCA
TCGACCGATGAACACATCCATTTTTATTATATTATTTAAGAATCTGACAAAATCAAAAAA
AAAAAAAAAA

Homology of Contig U35_8806 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None