barSeed - Barley Seed Development Database

Probe CUST_2000_PI390587928

Source Contig U35_46751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2000_PI390587928	Hv_44K_v2	GAGAGTCCTGTTCAATTTCGTAATAAGTGTTCAAGCATCTATCTGTCTATCTATCTATGC	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72618.2	1123	2e-24	21 - 80	100	60 / 60	minus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00652 ABC00969 ABC45765
JLOC1	JLOC1_48305.1	1125	8e-25	1021 - 1080	100	60 / 60	plus
Harvest21	ABC47255	569	3e-25	26 - 85	100	60 / 60	minus
Harvest35	U35_46751	569	3e-25	26 - 85	100	60 / 60	minus

Contig Sequence (569 bp)

>U35_46751 569 Hv_44K_v2
TTTTTTTTTTTTTTTTTATATACATGCATAGATAGATAGACAGATAGATGCTTGAACACT
TATTACGAAATTGAACAGGACTCTCTTTAGCTGTTTACTTCAGAAACATCTTAGGGCTCA
AAATACAATAAAACAATAGTATGACAGTGAAACCACAGCCGGAGCTCGGTAACTGTTGAT
CTCAGGAAAATACACAGTACATACGGGAATAGCATAGCACCATCCCATCCCAACACAATC
CCTAGGTACCCGGTGATTGAATCATCCATCCAAAGCGCTCCTAGCTCTTTCAAAATCTTG
ACGAAAATTTAGGACTTGTTGGCAATGTTGCTGGACAGCCAGTCCAGGCCTTCATACAGT
CCCTCCCCTGTTGTAGCACAAGTGCTCTGGATGTACCAGTGTCGCTGGCGAAGGGAGTGC
AGGCCAAGCTTATCAGTGATCTCAGCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTA
GCAAACACAAGCAGCACAGCATCACGTAACTCATCCTCATTCAGCATCCTGTGGAGCTCA
TCCCTTGCTTCAACAACACGGTCCCTATC

Homology of Contig U35_46751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g16030.4	182	8e-55	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g53867.1	182	8e-55
Arabidopsis v10	AT3G62290.1	181	5e-54	\| Symbols: ATARFA1E, ARFA1E \| ADP-ribosylation factor A1E \| chr3:23052287-23053545 FORWARD LENGTH=181