barSeed - Barley Seed Development Database

Probe CUST_1997_PI390587928

Source Contig U35_46754

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1997_PI390587928	Hv_44K_v2	TTGTGGAGTTTTCAGAGGCTATGAGAACTGTTGCAAAAGCACTGCGACAAGTTGCTGAAG	544	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367623	2353	2e-24	558 - 617	100	60 / 60	plus	ABC11274 ABC12751
MLOC	MLOC_52165.1	2131	2e-24	355 - 414	100	60 / 60	plus	ABC11274 ABC12751
JLOC1	JLOC1_33387.2	2056	8e-25	266 - 325	100	60 / 60	plus
JLOC1	JLOC1_33387.1	2063	8e-25	268 - 327	100	60 / 60	plus
Harvest21	ABC47265	693	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_46754	693	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (693 bp)

>U35_46754 693 Hv_44K_v2
CAGCCTCCCCCTCCCCCTCGCCTTCGCCTTCTCCGACCACCCGCGCGCATCCAACCACCC
CCACCCCCACCACCCACCCTTCTCCCCTCCGCAAATCCCACACCACGCACGCGCGCACGT
AGCAGCAGCAGCAGCAGCGCACCACTGCCTGCCCGCCCCCCCAACCGGAACCCGAAGCCA
AACAGGAACCCGCCACTGGCGGAGCGGAGCGGAGCAGAGGACGCCACGTCGAGCAGCCAG
CCGGATCGCGCCGCCATGCCGCTCGGCGAGCCCGCCCACCAGGACGCGGCCCAGCTCGCG
CAGCAGCCGGACTCGAGGTTCCGGAGCCTCAACCCGGGGCCGATACCCATCCCGGCGGCG
CCCAGCTCCAGATCGCTGCTCGACACGGTTTCTGATCAAACAGTAGATCTGGATCTCACA
GCCTCACATCAAAGTGAAAATGGCTCCATCTCTACAGTTAGCTCTACTGTTAGTTCAGTG
GAATCAGAGAAAGCAGCTTATGAATTCCTTGCTCAAACTCCTATCAAGTCAACCGATAAA
CACCTTGTGGAGTTTTCAGAGGCTATGAGAACTGTTGCAAAAGCACTGCGACAAGTTGCT
GAAGGGAAGGCTGCTGCTCAAGCAGAGGCGGCAGAGTGGAAACGGAAATACGAGTTAGAG
ACGGCGCANAAGCAACAAACCAGAATCAAAGAC

Homology of Contig U35_46754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None