barSeed - Barley Seed Development Database

Probe CUST_19942_PI390587928

Source Contig U35_31453

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19942_PI390587928	Hv_44K_v2	GGACCACACCGCCTGCCATGCGGCCGACGCCGCGTTCCCAACCACCGAGGCGGAGCTGCT	108	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361483	2224	2e-24	222 - 281	100	60 / 60	plus	ABC09320 ABC14510
MLOC	MLOC_29702.1	279	9e-22	1 - 55	100	55 / 55	minus	None
Harvest35	U35_31453	472	3e-25	109 - 168	100	60 / 60	plus

Contig Sequence (472 bp)

>U35_31453 472 Hv_44K_v2
CCTGATCCTCCTCCTGAGCCCCGCCGGCTCCAGCCCTCCGCCGGACTCGGTATCCTGCGC
GCGGGGCACGTCCGACTGCACCCTGGCCAACGTCTACGGCTCCTTCCCGGACCACACCGC
CTGCCATGCGGCCGACGCCGCGTTCCCAACCACCGAGGCGGAGCTGCTGGCCGCCGTGGC
GGCCGCCGCGGCGGCCAAGCGCAAGGTGAAGGCGGCCCCCAGGCACTCCCACAGCTTCCC
CAAGCTGGCCTGCCCGGGCGGCCGCGACGGCACCATCATCAGCACGGCGCGGCTCAACAG
GACGGTCAGCGTCGACGCCGCTAGGGGGCTGATGACCGTGGAGGGCGGCATGGTGCTCCG
GGACCTCATCCGCGACGCCGCAGCCGCGGGGCTCGCGCTGCCGCACTCGCCCTACTGGTA
CGGCGTCACCATCGGGGGCCTGCTGGCCACGGGCGCGCACGGCAGCTCGCTG

Homology of Contig U35_31453 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02230.1	590	1e-55	protein\|FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
Brachypodium v1_2	Bradi3g13700.1	590	2e-56
Arabidopsis v10	None