- Probe CUST_19912_PI390587928
- Source Contig U35_31460
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19912_PI390587928 | Hv_44K_v2 | AAATGGCTGGCCAAGACGTGGCTGCTCAAGTACTCGGTGGACCTGCTCCTGCGGAACCTC | 8 | GeneList: floralwhite MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.405 | 0.446 | 1.514 | 1.787 | 0.726 | 1.177 |
| Raw | 8.023 | 13.226 | 40.697 | 72.074 | 11.507 | 19.620 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53532.1 | 2715 | 2e-24 | 393 - 452 | 100 | 60 / 60 | plus | ABC13470 |
| MLOC | MLOC_53533.1 | 5124 | 2e-24 | 376 - 435 | 100 | 60 / 60 | plus | ABC13470 |
| Harvest35 | U35_31460 | 186 | 3e-25 | 9 - 68 | 100 | 60 / 60 | plus |
Contig Sequence (186 bp)
>U35_31460 186 Hv_44K_v2 TGCTGATGAAATGGCTGGCCAAGACGTGGCTGCTCAAGTACTCGGTGGACCTGCTCCTGC GGAACCTCGCCGCGCTCCGCCGCCTCGGCGTGCCGGACGGCCGCCTCACGGCCGCCGTGC GCCTGCGGCCGACGCTCATCATGCATTCGCCGGACAAGCTCCGGGCGCTGGTCGGCCGCG TGGAGG
Homology of Contig U35_31460 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |