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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_19899_PI390587928Hv_44K_v2AGGAATCGCTGAAGCTGGCATACGGGGAGGATTCTGAGTTCATCAGGGACAGAGGATCGC441GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0290.1191.0252.1241.0551.519
Raw 5.23135.722319.1391048.707183.460281.560



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36327015813e-21436 - 4969759 / 61plus ABC02799 ABC02803
MLOCMLOC_37080.211953e-2139 - 999759 / 61plus ABC02803
MLOCMLOC_37080.312363e-2138 - 989759 / 61plus ABC02803
MLOCMLOC_37080.112693e-2145 - 1059759 / 61plus ABC02803
JLOC1JLOC1_23964.114362e-2145 - 1059759 / 61plus
Harvest21ABC0280317176e-22425 - 4859759 / 61plusABC02803
Harvest35U35_314695073e-25442 - 50110060 / 60plus
Harvest35U35_1514316906e-22398 - 4589759 / 61plus



Contig Sequence (507 bp)

>U35_31469 507 Hv_44K_v2
GGATAGCGGCACGCAACACGCAACACGCAGCAAAGCGCCGGTGCCGCTTCCCCAGGACCC
CAGGTCACCAGCCACCTCCTCTCTTCTCCAGCAGCAGCGGCAGCCTCGCCACGCGCCGCG
CGCGCGCAGCAACCGGCATGGCGATGTCTCGCGCCGCCGCGGCCGTCCGGCAGCGCCGAC
GCGTGCCGCTCCTGCCCGCGGCGAGGTCCATGGCGTCGTGGTTCGGGCACGTGGAGCCGG
CCCCCAAGGACCCCATCCTCGGCGTCACCGAGGCCTTCCTCGCCGACCCCTCGCCGGACA
AAGTGAACGTCGGCGTCGGCGCGTACCGGGACGACGCCGGGAAGCCCGTGGTGCTGGAGT
GCGTGCGCGAGGCGGAGCGGCGAATCGCCGGGAGCACCAACATGGAGTACCTTCCGATGG
GAGGAAGCGTGAAGATGATTGAGGAATCGCTGAAGCTGGCATACGGGGAGGATTCTGAGT
TCATCAGGGACAGAGGATCGCGGCAGT



Homology of Contig U35_31469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g35540.14642e-54protein|aminotransferase, classes I and II, domain containing protein, expressed
Brachypodium v1_2Bradi3g09050.23894e-54
Arabidopsis v10None