barSeed - Barley Seed Development Database

Probe CUST_19864_PI390587928

Source Contig U35_43451

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19864_PI390587928	Hv_44K_v2	GTTCACACGTATGTTCTGGGTTTAATTCGTTTGTTATGTGATATTGCTGGAACAAACTTT	304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_78605.2	2814	2e-24	1847 - 1906	100	60 / 60	minus	ABC40111
MLOC	MLOC_78604.1	2494	2e-24	2004 - 2063	100	60 / 60	minus	ABC40111
JLOC1	JLOC1_52387.5	1247	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_52387.4	1266	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_52387.3	2446	8e-25	432 - 491	100	60 / 60	plus
Harvest21	ABC40111	396	3e-25	305 - 364	100	60 / 60	plus	ABC40111
Harvest35	U35_43451	396	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_43451 396 Hv_44K_v2
CCCAGAGAAAATGTACATTTGGACAAAATATGGCAGCCATTCGAATGCCAATGTTAGTGT
GTTTCCCTTACATGTGCTGACTTGGGACGATCAGCTACACTAGGGAAATAGTTCAGATTT
GGTACCACGTTGGTCGTATCTATTGCCAAGATTGTCAATTTTAGTTGTAGTGTTCTCGCT
TGACGACCAAACAATAGATAAATAGTGTTTGTGTGGCTTGCCCTGAGGTTGAGGTCCTTG
GTTCCTTCTGTAGTAGGTCGTGTATGTATATTTGTGTCGACCTCACTTGCATGCTGCAGG
TTCAGTTCACACGTATGTTCTGGGTTTAATTCGTTTGTTATGTGATATTGCTGGAACAAA
CTTTTCATAGGTTTATACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_43451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None