barSeed - Barley Seed Development Database

Probe CUST_19848_PI390587928

Source Contig U35_29169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19848_PI390587928	Hv_44K_v2	TTCCTGGAGGAGAACATAGGCGAGTATCTGGATTCCACGACGGTGAAGGTCATCCAGGGC	280	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26796.1	405	2e-24	133 - 192	100	60 / 60	minus	ABC05376 ABC05377
JLOC1	JLOC1_18170.1	350	8e-25	78 - 137	100	60 / 60	minus
Harvest21	ABC28370	640	3e-25	281 - 340	100	60 / 60	plus
Harvest35	U35_29169	640	3e-25	281 - 340	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_29169 640 Hv_44K_v2
GCGCCGCACCCGCTGCAGCTCCCACCCTCCTCGCCGCACCAGTGCATGCTGTCGTTCGCT
CCTCCACCTGCAGGCGATGCCGAGCCCGCGGTCTCCCTCCCCAAGATTGCTCTGGAGCCC
GCAGTTCTCCTCCACCTACAACGGGAACATGCAGGAGCAGCAGCGAGCCAGATCTGGGCC
TTGTCGAGGAGGTCTGTCTCTGGAGCCGCTGATCGGGGCCATAGCGGCGGGGAACGCCGT
GGCGCTGAAGCCGTCGGAGCTGGCGCCGGCGACGGCTAGGTTCCTGGAGGAGAACATAGG
CGAGTATCTGGATTCCACGACGGTGAAGGTCATCCAGGGCGGCCCCGCGGTGGGCGAGCA
GCTCATGGAGCACCGATGGGACAAGGTCCTCTTCACCGGGTGCCCGCGCGTGGTGATGGC
GGCGGCGGCGAAGCACCTGACGCCGGTGGCGCTGGAGCTGGGTGGGAAGTGCCCCTGCAT
CTTCGACGCCGTTGCCGGCAGGAGGAACCTCCAGTTCTCAGTGAACCGCGTGATCTTCGC
CAAGTGGTCATCCTGTGCCGGCCAGGCCTGCATCGCCATCGACTACGTGCTCGTCGAGGA
GCGATTCGCGCCCACCCTCGTACCCACGCACGCTTTTGTC

Homology of Contig U35_29169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g45720.1	500	2e-75	protein\|aldehyde dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi5g17110.1	496	1e-82
Arabidopsis v10	AT4G36250.1	484	2e-51	\| Symbols: ALDH3F1 \| aldehyde dehydrogenase 3F1 \| chr4:17151029-17153381 FORWARD LENGTH=484