barSeed - Barley Seed Development Database

Probe CUST_197_PI415269222

Source Contig TA39871_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_197_PI415269222	Hv_44K_v2	TGAGATGAAACTCTGGTATATTCTGATGGCTGCTAAACGTTGGGAAGTTTTTGGACCGCC	971	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.972	2.159	1.264	0.789	0.283	0.338
Raw	2489.797	4130.747	2167.967	2124.527	272.885	346.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29520.1	789	4e-23	682 - 741	98	59 / 60	plus
Harvest21	ABC03335	1055	3e-25	969 - 1028	100	60 / 60	plus	ABC03335
Harvest35	U35_15448	1055	3e-25	969 - 1028	100	60 / 60	plus

Contig Sequence (1034 bp)

>TA39871_4513 1034 Hv_44K_v2
CTCCGGCCCCTCCCACGCGCCGCTGCTCGCGCGGGGAGAGAGAGACAGACGAAGCCGAGA
TCGATCGAGCGAACGCCGCCGCCGCATCGGAGCACGCGCGCGAGCGACGCCGTCCCCGCC
TCGCTCGGCCCGGGAGTTAGGGCGCGATGGCGGCGCCGCCGGCCAGGGCTCGGGCCGACT
ACGACTACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGTGTTGGAAAAAGTTGTCTGC
TCCTACGGTTCTCAGATGGCTCCTTCACCACTAGCTTCATCACCACTATTGGCATTGACT
TCAAGATAAGGACTGGTGAGTTGGATGGCAAGCGGATTAAGTTGCAGATCTGGGATACTG
CTGGCCAAGAACGCTTTCGGACTATAACTACTGCCTACTACAGGGGAGCCATGGGCATTT
TACTTGTTTATGATGTCACGGACGAGTCGTCATTCAATAACATAAGAAATTGGATCAAAA
ACATTGAACAACATGCTTCAGATAACGTGAGCAAAATTTTGGTGGGGAACAAAGCGGATA
TGGATGAAAGCAAAAGGGCTGTTCCCACTTCAAAGGGCCAGGCCCTGGCCGATGAATACG
GGATCCAGTTCTTTGAAACGAGTGCAAAGACAAACATGAATGTCGAGCAGGTTTTCTTCT
CTATTGCAAGAGACATCAAGCAGAGACTCTCGGAGGCTGATTCCAAACCTGAGGGGGGAA
CTATCAAGATCAACACGGAGGGTGATGCCAGTGCAGCAGCAGGACAGAAGTCGGCTTGCT
GTGGGTCTTGAACCGTCGTCGCCACGGGAAAAGAGATAGTTGCGACACGGTGCTTGTAAT
TCTTGTCATTCCATTCTTTGTGTGCTGGTTTCGTTGTGTTATTTAAGTTATCGCTGTTGT
TAGGATCTGGACAAATTGGTGTTAAGTCAGAGCAATTACTTGCAGTATCGGTGGAAACTT
TTTGTTTTTGTTGAGATGAAACTCTGGTATATTCTGATGGCTGCTAAACGTTGGGAAGTT
TTTGGACCGCCTCT

Homology of Contig TA39871_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60530.1	215	2e-115	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g03820.1	215	8e-117
Arabidopsis v10	AT3G46060.1	216	2e-106	\| Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A \| RAB GTPase homolog 8A \| chr3:16917908-16919740 FORWARD LENGTH=216