barSeed - Barley Seed Development Database

Probe CUST_19797_PI390587928

Source Contig U35_28519

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19797_PI390587928	Hv_44K_v2	CCATTCAGCTCTGGACCATAAAGACTGGATGGGGAAGCAGACCAGATATTCATGTTGAAA	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364497	2132	2e-24	1065 - 1124	100	60 / 60	plus	ABC16122
MLOC	MLOC_17422.1	869	2e-24	721 - 780	100	60 / 60	plus	None
JLOC1	JLOC1_12034.1	1047	8e-25	733 - 792	100	60 / 60	plus
Harvest21	ABC27455	694	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_28519	694	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_28519 694 Hv_44K_v2
CACGNGGGGNAGGACGAGGNCGAGGATGATGACGACGACGACGATGATATGGATGACGAT
GGGGAGGATTTCGGCAGGATTCCCCTCAGCAACGAAATTGTTCTGCGGGGGCACACCAAG
GTGGTCTCAGCCCTTGCTGTTGACCCTACAGGATCCCGAGTGCTCTCCGGCAGCTACGAT
TATACTATACGGATGTATGACTTCCAAGGCATGAATTCAAAGCTACAGTCATTTAGGCAA
TTAGAACCTTGTGAGGGGCATCAAGTTCGTAGCCTAAGCTGGAGTCCGACATCGGACCGA
TTCTTATGTGTCACGGGTTCTGCTCAGGCCAAGATATATGACCGAGATGGGCTTTCGCTT
GGTGAGTTTGTTAAGGGTGATATGTATATCCGTGATCTGAAGAATACAAAGGGTCACATT
TCTGGACTAACTGGTGGTGAATGGAATCCCAAGTCAAAAGAAACTATATTGACCTCATCG
GAAGATGGATCATTACGTCTCTGGGATGTTTCAGACTTTAGCAGTCAAAAGCAGGTCATC
AAACCTAAGTTAAAAAGACCAATGCGAATTCCTGTTACTTCATGTGCATGGGATCATGAA
GGCAAGCGGATTGTTGCTGGCGTGGGGGATGGTTCCATTCAGCTCTGGACCATAAAGACT
GGATGGGGAAGCAGACCAGATATTCATGTTGAAA

Homology of Contig U35_28519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g32710.2	647	1e-137	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi3g28150.1	629	2e-144
Arabidopsis v10	AT2G20330.1	648	6e-118	Transducin/WD40 repeat-like superfamily protein \| chr2:8772888-8775518 REVERSE LENGTH=648