barSeed - Barley Seed Development Database

Probe CUST_19772_PI390587928

Source Contig U35_42814

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19772_PI390587928	Hv_44K_v2	AAGAGTTCAGCTCAATCCCAGATGTGATACTTAGTGGAAACTCATTCCTGAATGGACCTG	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375989	2978	2e-24	1108 - 1167	100	60 / 60	plus	ABC06842 ABC06843
MLOC	MLOC_59102.2	4013	2e-24	618 - 677	100	60 / 60	plus	ABC00615 ABC06842 ABC06843
MLOC	MLOC_59102.1	3887	2e-24	529 - 588	100	60 / 60	plus	ABC00615 ABC06842 ABC06843
JLOC1	JLOC1_38438.1	3903	8e-25	529 - 588	100	60 / 60	plus
Harvest35	U35_42814	670	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_17135	2460	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_42814 670 Hv_44K_v2
CCGAGTCCTCCGACTCCGCCGCTCTGGGGAATCTCTACACCTCCTGGAACAGCCCGCCGC
AGCTGGCCGGCTGGTCGGCCAGCGGCGGCGACCCCTGCGGCGCGGGGTGGCAGGGCGTCT
CCTGCACCGGCTCGGGCGTCACCGAAATCAAGCTCGCTGGGACAGGGCTGAATGGCTCTC
TGGGCTACGAGCTCTCCAATCTGTTCTCACTCAAAACATTGGATTTGAGCAACAACCATA
TTCAAGGTTCAATTCCTTACCAGCTGCCACCAAACCTCACATATCTGAATCTGGCGACCA
ACAATTTCTCTGGCAATCTCCCATACTCCATATCCAACATGGCTTCAATTGAGTACCTCA
ATCTCAGCCACAACGCACTGGCTCAACAAATAGGCGATTTGTTTGGAAACCTCACTTCAC
TTTCAGAGTTGGACGTGTCTTTCAACAAACTGACAGGGGATCTTCCAACTTCTATTGGCT
CTCTATCAAATATTTCTAGTCTCTATATGCAAAACAATCAGTTAACAGGTTCTGTCAATG
TTCTAAGTGGTCTAGGCCTTACTACCCTAAACATTGCAAACAACAATTTCAGTGGCTGGA
TACCGAAAGAGTTCAGCTCAATCCCAGATGTGATACTTAGTGGAAACTCATTCCTGAATG
GACCTGCTCC

Homology of Contig U35_42814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09740.1	719	3e-131	protein\|STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed
Brachypodium v1_2	Bradi3g06590.1	716	6e-143
Arabidopsis v10	AT4G22130.1	703	3e-82	\| Symbols: SRF8 \| STRUBBELIG-receptor family 8 \| chr4:11723733-11727331 FORWARD LENGTH=703