barSeed - Barley Seed Development Database

Probe CUST_19686_PI390587928

Source Contig U35_38789

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19686_PI390587928	Hv_44K_v2	AGGAGTGGTACTTCTTTTGCCATAAAGACCGCAAGTACCCGACGGGGACGAGGACCAACC	444	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64057.1	1625	2e-24	449 - 508	100	60 / 60	plus	ABC09757 ABC11098
MLOC	MLOC_64057.2	1651	2e-24	348 - 407	100	60 / 60	plus	ABC09757 ABC11098
JLOC1	JLOC1_42017.1	1765	8e-25	443 - 502	100	60 / 60	plus
Harvest21	ABC34716	669	3e-25	445 - 504	100	60 / 60	plus
Harvest21	ABC30196	495	3e-25	361 - 420	100	60 / 60	plus
Harvest21	ABC13225	657	3e-25	337 - 396	100	60 / 60	plus
Harvest35	U35_38789	669	3e-25	445 - 504	100	60 / 60	plus
Harvest35	U35_30327	495	3e-25	361 - 420	100	60 / 60	plus
Harvest35	U35_20522	657	3e-25	337 - 396	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_38789 669 Hv_44K_v2
GGGCCTGCAGGCCGCCTCTCCCTCTCTCTTTACACACGCCTCTCTCTCTTTCTCTCGGCC
TCCATTTCCTCTTCTTCTAGCTCTAGCTAGCTAGCTTGCTTCGGCGCCCGGCTTGGAGAT
GTCTGAGGTTTCGGTGATAAACCAGGCGACGGAGGTGGAGGACGCGGCGGCGGGGCTGGA
CCTGCCGCCGGGGTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCAC
CCCCAAGGCTCTCGACCACCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAA
GTGCGAGCCATGGCATCTCCCAGGTACACGTCCAAATTAAGCTGCTCCTCTGATCTGATC
ATCCGAGCCCGACGGGCCGTGCCTTAAGCTTACTTAGTTTGCGTGTTTCCACCGGCCGGA
CAGGCAAGGCCAAGATGGGCGAGAAGGAGTGGTACTTCTTTTGCCATAAAGACCGCAAGT
ACCCGACGGGGACGAGGACCAACCGCGCCACCATGAGCGGCTACTGGAAGGCCACCGGCA
AGGACAAGGAGATCTTCCGGGGGAGGGGCATCCTCGTCGGAATGAAGAAGACGCTCGTCT
TCTACCTAGGCCGTGCACCCCGCGGCGAGAAGACCGGCTGGGTCATGCACGAGTTCCGCC
TCGAGGGCA

Homology of Contig U35_38789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21030.1	359	7e-72	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi1g63630.1	359	1e-76
Arabidopsis v10	AT3G04060.1	338	1e-54	\| Symbols: anac046, NAC046 \| NAC domain containing protein 46 \| chr3:1053625-1054952 REVERSE LENGTH=338