- Probe CUST_19679_PI390587928
- Source Contig U35_9701
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19679_PI390587928 | Hv_44K_v2 | GATGAGGCTCTAAATGTTGCAGCGGAAGAGAGGGAGTTATTGATGAAGGACACTGCTAAA | 505 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.436 | 0.433 | 0.994 | 1.539 | 2.110 | 2.707 |
| Raw | 9.429 | 14.390 | 30.862 | 62.853 | 35.749 | 50.068 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70044.5 | 2653 | 2e-24 | 2114 - 2173 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.1 | 3087 | 2e-24 | 2120 - 2179 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.6 | 3028 | 2e-24 | 2110 - 2169 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.2 | 3160 | 2e-24 | 2120 - 2179 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.3 | 3084 | 2e-24 | 2117 - 2176 | 100 | 60 / 60 | minus | ABC11831 |
| MLOC | MLOC_70044.4 | 2630 | 2e-24 | 2117 - 2176 | 100 | 60 / 60 | minus | ABC11831 |
| JLOC1 | JLOC1_46451.7 | 2943 | 8e-25 | 768 - 827 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.6 | 2807 | 8e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.5 | 2804 | 8e-25 | 629 - 688 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.4 | 2777 | 8e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.3 | 2765 | 8e-25 | 587 - 646 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.2 | 2741 | 8e-25 | 566 - 625 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_46451.1 | 2661 | 8e-25 | 486 - 545 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9701 | 565 | 3e-25 | 506 - 565 | 100 | 60 / 60 | plus |
Contig Sequence (565 bp)
>U35_9701 565 Hv_44K_v2 AGCCACCCCCCGCCCTTCCTCCCTCCATCCATCCACACCATAGGATGCCTCCACAGAGTC ACAGGTGAGTGACCCAGCACTGCAGTCCCTTCTTGGCAAGCGGCGGCAGAGCCACTGCCA TTCACTCACTGGAACGGAGGGTATCTTGTGTTTCATTGATTATACTGGTAAAAAGTGAGA GCATCTATCTATGGACCATAAAACATGGCTTTGGAGAAAGAAAGCATCGGAAAGGGCAGT TTCAGTAAAGAACAAACCCAATGATAAGGAACATGAGGAGAAGATTGCACGGCTAGAGAG ATCACTGCAAGGCTTAAATGAACAACTTTCATTTGCTCATGCTGAATGCTTCGAGAAGGA TGCTATTCTATCCAAGCAAGCAAAAGTAGCTGAAGAAGCCATACTAGGCTGGGAGAAAGC AGAGGCTGAAGCTATAGCTATCAAGACAGAACTTGATGATACTCTACATGAGAAAGCCAT GGTTGAGCAAAGGATTCGGCAGCTTGATGAGGCTCTAAATGTTGCAGCGGAAGAGAGGGA GTTATTGATGAAGGACACTGCTAAA
Homology of Contig U35_9701 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |