barSeed - Barley Seed Development Database

Probe CUST_1963_PI390587928

Source Contig U35_46777

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1963_PI390587928	Hv_44K_v2	TGTCGTCGGATGACCAAAGGTTGCTCCGCAACTCTTCTTCCCTGCCGGCTTCTTCTCAAC	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69504.2	1330	2e-24	493 - 552	100	60 / 60	plus	None
MLOC	MLOC_69504.3	1329	2e-24	470 - 529	100	60 / 60	plus	None
MLOC	MLOC_69504.4	1533	2e-24	449 - 508	100	60 / 60	plus	None
MLOC	MLOC_69504.1	1262	2e-24	510 - 569	100	60 / 60	plus	None
MLOC	AK362801	2907	3e-21	355 - 414	97	58 / 60	plus	ABC13116
MLOC	AK372571	2592	3e-21	405 - 464	97	58 / 60	plus	ABC13116
JLOC1	JLOC1_46055.6	1540	8e-25	441 - 500	100	60 / 60	plus
JLOC1	JLOC1_46055.5	1786	8e-25	441 - 500	100	60 / 60	plus
JLOC1	JLOC1_46055.4	1157	8e-25	441 - 500	100	60 / 60	plus
JLOC1	JLOC1_46055.3	1221	8e-25	454 - 513	100	60 / 60	plus
JLOC1	JLOC1_46055.2	1564	8e-25	480 - 539	100	60 / 60	plus
JLOC1	JLOC1_46055.1	1232	8e-25	480 - 539	100	60 / 60	plus
Harvest21	ABC47318	647	3e-25	431 - 490	100	60 / 60	plus
Harvest21	ABC28455	585	6e-22	366 - 425	97	58 / 60	plus
Harvest35	U35_46777	647	3e-25	431 - 490	100	60 / 60	plus
Harvest35	U35_48785	546	6e-22	198 - 257	97	58 / 60	minus
Harvest35	U35_29226	585	6e-22	366 - 425	97	58 / 60	plus

Contig Sequence (647 bp)

>U35_46777 647 Hv_44K_v2
CGGAACCACTCGACGAGACGAGACGAGACGGGGAGCGAATCCATCCCCAATCCCACGCAG
CGCAGCCACTGGAGGAGGCCACCGCATCTCCTAGGGTTTCATTCGCCTCCCCCCACCCAC
ATCTCGCCCCCCCGCATCTCCAATCCAGCCAGGGGCATGGCCGACGCCGACGACCTGCTG
GCCCGGAGGCTCGACTCGGACGCCGACGCCGACGGCACCAGCAACCTCTTCCAGGTCATG
CGCGCCGTCGAGGACGCCGAGGCAACAATCCGACACCAGCTGGAGGAGAACAGCCGCCTC
AAGGAAGAGCTGATGCGCAAGACCACAGAGCTCAACATCATCAGGTCAGAGGCCGCAAAC
CAAACTTCTTCAGGCGGCCTGGATCAGGACCGTGCCGTCGAGCCCTACGGAAACTCGGAC
GGGAATAACATGTCGTCGGATGACCAAAGGTTGCTCCGCAACTCTTCTTCCCTGCCGGCT
TCTTCTCAACCCACTCTGCCTGGCCATCACAATCGGGAGTACCTGGATGGAGACCAGCCC
GGTGGCATGTCCCGAAAGCCGTCAGGGGAGCACATCGCTGCCGAGGCTGGCGTGCGATCT
CACTTCTCTACACCGTCGTCGCGTTCCCTCTCGCCGACTAGGCACCG

Homology of Contig U35_46777 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None