barSeed - Barley Seed Development Database

Probe CUST_19538_PI390587928

Source Contig U35_22122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19538_PI390587928	Hv_44K_v2	GGATGCGTATCCTATTGAGCCGCTAGGCGAAATCTACTAGGAGTACTTTCAAAGAAAAAA	951	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356380	2072	9e-22	1968 - 2022	100	55 / 55	plus	ABC12286
JLOC1	JLOC1_21536.1	1655	5e-22	1596 - 1650	100	55 / 55	plus
Harvest35	U35_22122	1022	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1022 bp)

>U35_22122 1022 Hv_44K_v2
GGCGCACTGCAAGGAGATGTCCTGGATCCAGTCCGTGCCCTACATCTACATCGGCGACAC
GGCCACCGTCGACGACATCCTCAACCGGACCGTCCCCAGGGACTCCGCCGCCAACAAGGC
CACGTCCGACTACGTCCGCCGCCCCATCTCCAGGGACGTGTGGGCGCGCATCTTCTCCGA
CTGGCTCGCAAGGCCCGACGCGGGGCTCATGATCCTCGACCCCTACGGCGGAAGCATCGC
CCGCGTGCCCGACCACGTCACGCCCTTCTCGCACCGCGCCGGCGTGCTCTACAACGTGCA
GTACATGAACTTCTGGGGCGGCGGCGGCGACGGCGCCGCGCAGACCAGGTGGGTCAGGGA
CATGTACGCCTTCATGGAGCCCCACGTCAGCAACAACCCGAGGGAGGCCTACATCAACTA
CAGGGACCTCGACATCGGCCAAAACGTCGTCGGCGCCGGCGGCGTCACCAGCTTCGAGGC
CGGCAGGGTGTGGGGGGAGAAGTACTACTCCAAGGCCAACTTCAGAAGGCTCGCCATGGC
CAAGGCTAAGATCGACCCCCGCGACTACTTCAGGAGCGAGCAGAGCATCCCGCCGCTTGT
TCTTGTTGGGGAGAACGTGCCGCACGTTGATAGCGTGATGAATCTCCATCCTGGTTGGTG
GACGGTGGACTGCGGGGCAGGCAGTCTCTGCTCACGCCTTACCTCCATCTTAACTAAGCT
CATGCCTGCTTTCTCTTAGACGTAGCATCCCATTTTGTTTTACATACTATTTTGCACTCT
CATTGTCTACTTACTACTCCCTCCGTCTTAAAATAAGTGTCTCAACTTTATACTAGCTCT
AGTATAAAATTATACTAAGCTTAAGACAATTATTTTAGGACGGAGGGAGTATTTGTTAGC
CGGAAATAAAGCTTGAAATCATTGTGCGTGTTGGAATAGTAAAATGGAGCGGGATGCGTA
TCCTATTGAGCCGCTAGGCGAAATCTACTAGGAGTACTTTCAAAGAAAAAAAAAAAAAAA
AA

Homology of Contig U35_22122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35700.1	529	7e-95	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g09380.1	543	2e-95
Arabidopsis v10	None