- Probe CUST_19498_PI390587928
- Source Contig U35_10167
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19498_PI390587928 | Hv_44K_v2 | CTCTTCATGGATATGGAATTGGAAGAAAGAATGAATTTGCATTGCCTTTTGGAGCTAGAG | 440 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.926 | 2.125 | 1.496 | 0.720 | 0.506 | 0.599 |
| Raw | 201.328 | 222.678 | 143.662 | 97.447 | 25.475 | 34.536 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3335.2 | 3006 | 7e-23 | 2166 - 2225 | 98 | 59 / 60 | minus | ABC08692 ABC14481 |
| JLOC1 | JLOC1_1997.1 | 2959 | 4e-23 | 517 - 576 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC20028 | 581 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_10167 | 581 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus |
Contig Sequence (581 bp)
>U35_10167 581 Hv_44K_v2 CCCCTCTTCTCCTTCCATTCCACCCTCGCCCCTCCCCTCCCCTCCTTTCCCTCCCTCCTC AAAAACCCTAAACCCTACCTCGACGGGATCGGTCGATCGGCGCCGCGTCCCTCGCCGGAT TGTACTTAGAACGGCATGATCTTTGCTTTCCCATTGGGAGGGTGAGTAGCAACCAAGTAT GGCTTCAAGGGCGATCATTAGGAGAAGGAAGTGTCTTTTGGATAATGTTAACACACCAAT CCTGTCATCCTCCTTCTCTACCTTCCAGCATGAGGCATTTGGTTTCAAGGCTCAGCCAAG AATAGCACAGCGATTTCTCGAGCAAAGTTTAGGGGACTCAAAATCTGACAAGGAGAAAGA GCGGTATACTGTGAGTTTGACAAAGGGTGGTCTGCTAAGTCTTGGAAATGGGTTTCCGCA GCGACCAGCTCACGTGATTTCTCTTCATGGATATGGAATTGGAAGAAAGAATGAATTTGC ATTGCCTTTTGGAGCTAGAGGTTTGTTGCAGTCAGTCCGCAGCGCATCAACTGCAACTGC TGGGCAACCTAAGTTCGATATTGAAGAAGAACAGAGTGAAG
Homology of Contig U35_10167 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g48350.3 | 766 | 2e-55 | |
| Arabidopsis v10 | None |