- Probe CUST_19392_PI390587928
- Source Contig U35_36688
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19392_PI390587928 | Hv_44K_v2 | GTCAAGGAGAGATGAAATGGATGTTGATGATGATGTGGAAATTCATGGCTCAAAAGACAA | 25 | GeneList: blue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.657 | 2.009 | 1.307 | 0.683 | 0.262 | 0.253 |
Raw | 3879.260 | 7143.917 | 4051.237 | 3193.997 | 447.507 | 472.744 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK356860 | 3478 | 2e-24 | 3033 - 3092 | 100 | 60 / 60 | plus | ABC02848 |
JLOC1 | JLOC1_34817.5 | 3587 | 8e-25 | 2686 - 2745 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_34817.4 | 3991 | 8e-25 | 2686 - 2745 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_34817.3 | 3709 | 8e-25 | 2684 - 2743 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_34817.2 | 3600 | 8e-25 | 2670 - 2729 | 100 | 60 / 60 | plus | |
JLOC1 | JLOC1_34817.1 | 3187 | 8e-25 | 2684 - 2743 | 100 | 60 / 60 | plus | |
Harvest21 | ABC31913 | 117 | 3e-25 | 26 - 85 | 100 | 60 / 60 | plus | |
Harvest21 | ABC02848 | 4145 | 3e-25 | 2928 - 2987 | 100 | 60 / 60 | plus | ABC02848 |
Harvest35 | U35_36688 | 117 | 3e-25 | 26 - 85 | 100 | 60 / 60 | plus | |
Harvest35 | U35_15112 | 4350 | 3e-25 | 3133 - 3192 | 100 | 60 / 60 | plus |
Contig Sequence (117 bp)
>U35_36688 117 Hv_44K_v2 GAGAAAAGGAGAAAGGAAAGGACCGGTCAAGGAGAGATGAAATGGATGTTGATGATGATG TGGAAATTCATGGCTCAAAAGACAAAAATTTGAGAAGAGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_36688 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |