barSeed - Barley Seed Development Database

Probe CUST_19185_PI390587928

Source Contig U35_7135

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19185_PI390587928	Hv_44K_v2	CCAATGGCATATAGTTTCAACTTTCAAACATCCGATGGAATATCATTTCAACAATCTCTC	795	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56555.2	2336	2e-24	1356 - 1415	100	60 / 60	plus	ABC15587 ABC16494 ABC33445
MLOC	MLOC_56555.1	1915	2e-24	1356 - 1415	100	60 / 60	plus	ABC16494 ABC33445
JLOC1	JLOC1_36588.4	1489	8e-25	1344 - 1403	100	60 / 60	plus
JLOC1	JLOC1_36588.2	2410	8e-25	1055 - 1114	100	60 / 60	plus
JLOC1	JLOC1_36588.1	2175	8e-25	1055 - 1114	100	60 / 60	plus
Harvest21	ABC33445	649	3e-25	18 - 77	100	60 / 60	minus	ABC33445
Harvest35	U35_7135	872	3e-25	796 - 855	100	60 / 60	plus

Contig Sequence (872 bp)

>U35_7135 872 Hv_44K_v2
TAATAAAATTTATTTATACTACAGCAATGTGAATTGTATGGAAGAAACACGAGTAGTATG
TACTTATGGTGTTTTTTGCAACTTCAGCAGAAGCATCTGATTGTATGGATATTACTTATG
TTATATTTTGCTTGCAGTCATACTCGGAAATCACTTCAGATGACTACCTTGCATATATTA
GTAACTATGTTGTCGGCCTCGGTCCGTGGAAAGATACTATTGTTCCAGTTGCAAAAAACT
ATATGCTGGAACCAACTGATCTTGTTGCAAGAGCGCATGCTCATAATCTGCAGGTACACC
CTTACACATACAGGAACGAGAACCAGTTTCTGCACTTCAACTTCCATCAGGATCCCTATG
CCGAGTACGATTTCTGGATAAATACGGTGGGGGTTGACGGATTATTCACAGATTTCGCTG
GAAGCGTACACCAGTACCAAGAACTGAAAACCCCACACCCGAAGGACGCAACCGCGAGCA
GCCTCCTACTAAAAATTGCTCAGATGATCGCAGCATACGAAGGCCGCTGAATAAGTTTGT
GTTCCAGCAAAGTCACTGCCATTTTCAGTGATTAATGCGCAAGACCAAAATGGGTCGACA
TTTGATGATCCGCAGTGACCTTGAAAGGTCACTAATAGATGTTGGTTTACGCTGTTATAT
AGTGTTAACACGAGTTTATGTATGCCTATTCATTAACCCCCCGAATCTCGAGGGGGAGAT
ATATATTACCGCAGCAAACATTTTTTTTCCCGAAACGTTTCCAGACGAAACTGTAACAGT
TGGTGTATAGCTCATCCAATGGCATATAGTTTCAACTTTCAAACATCCGATGGAATATCA
TTTCAACAATCTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55780.1	392	3e-75	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi2g50710.1	392	8e-82
Arabidopsis v10	AT1G74210.1	392	6e-56	PLC-like phosphodiesterases superfamily protein \| chr1:27910396-27912785 FORWARD LENGTH=392