barSeed - Barley Seed Development Database

Probe CUST_1916_PI390587928

Source Contig U35_5728

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1916_PI390587928	Hv_44K_v2	GGTATTCCCCAGTTAGTAGATCATTTTATTCTCCCAACCTAGGGAGACGTCAGAGACTTG	861	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373112	4115	2e-24	1622 - 1681	100	60 / 60	plus	ABC06398
MLOC	MLOC_12447.2	3053	2e-24	916 - 975	100	60 / 60	plus	ABC06398
MLOC	MLOC_12447.1	3348	2e-24	917 - 976	100	60 / 60	plus	ABC06398
MLOC	MLOC_12447.5	3169	2e-24	911 - 970	100	60 / 60	plus	ABC06398
MLOC	MLOC_12447.3	3066	2e-24	916 - 975	100	60 / 60	plus	ABC06398
MLOC	MLOC_12447.4	3020	2e-24	916 - 975	100	60 / 60	plus	ABC06398
JLOC1	JLOC1_8351.1	3651	8e-25	917 - 976	100	60 / 60	plus
Harvest21	ABC11849	1032	3e-25	862 - 921	100	60 / 60	plus
Harvest35	U35_5728	1032	3e-25	862 - 921	100	60 / 60	plus

Contig Sequence (1032 bp)

>U35_5728 1032 Hv_44K_v2
TAGTGGATCCAAAGCAACCGCGCGACCCGTAGGGTCGTGGTGGTCCACCTGAATACCAAC
AGCATGACTATCAGGGACGTGGTGGCCCACGCCCTAGAGGGGGTGGAATGCCGCAGCCAT
CCTATGGCGGGCATAGGGGAGGACGTGGAGGACACAATGTTCCTCCAGGTCAGTCAAGAA
CAGTTCCCGAGCTGCACCAAGCACCAGATGTCCAATATCAAGCCCCGGTGGTTTCACCAT
CCGCATCGGGAGCTGGCTCATCCTCTCAGCCCGTGGCAGAGGTGAGCAGTGGACAAGTCG
AGCAACAGTTTCAGAAACTTGACATCAGTGATCAAAGTTCGACGAGCCAAGCCATTCAAC
CGGCACCTGCATCAAGCAAATCAGTTCGATTCCCATTGCGCCCTGGAATGGGTAAATGTG
GGGATCGGTGTGTGGTGAAAGCCAATCATTTCTTCGCGGAGCTCCCTGATAAAGACCTTC
ACCAATACGACGTGACCATAACGCCAGAGGTTACATCGCGCGGTGTTAATCGTGCTGTGA
TTGCAGAACTTGTAAAGCTGTATAGACAATCTCATATGAATGGACGTCTGCCTGCCTATG
ATGGAAGGAAGAGCCTTTATACAGCTGGGCCATTACCATTTACTACGAGGACATTTGAAA
TCGCTCTGCAAGATGAAGATGAAGGCCTCGTTGGTGGGCAAGCCACACCAAGGCGTGAGA
GACAATTCAGAGTGGTCATCAAGTATGCTGCCCGTGCTGATCTCCATCATTTGGCTATGT
TTCTAGCCGGGAGGCAACCAGATGCACCTCAAGAAGCTCTTCAGGTGCTTGACATTGTGC
TACGGGAATTGCCTACTGCCAGGTATTCCCCAGTTAGTAGATCATTTTATTCTCCCAACC
TAGGGAGACGTCAGAGACTTGGGGACGGATTGGAAAGTTGGCGTGGATTTTACCAAAGTA
TAAGACCTACTCAGATGGGGCTTTCGCTGAATATTGATATGTCTTCTACAGCATTTATCG
AGCCTCTCCCTG

Homology of Contig U35_5728 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g47870.2	1102	4e-155	protein\|PINHEAD, putative, expressed
Brachypodium v1_2	Bradi5g18540.3	1017	2e-170
Arabidopsis v10	AT1G48410.2	1050	1e-116	\| Symbols: AGO1 \| Stabilizer of iron transporter SufD / Polynucleotidyl transferase \| chr1:17886285-17891892 REVERSE LENGTH=1050