barSeed - Barley Seed Development Database

Probe CUST_19158_PI390587928

Source Contig U35_22027

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19158_PI390587928	Hv_44K_v2	ATAACCTGCTCCTCGGCTGTTATAATGGCCTGTGAAATGTAATACCTTGCCTGGAAAAAA	1168	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.204	1.760	1.084	0.783	0.358	0.411
Raw	645.961	1434.625	791.896	899.241	142.247	179.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_24657.4	1940	6e-21	1824 - 1880	98	56 / 57	plus
JLOC1	JLOC1_24657.3	1621	6e-21	1505 - 1561	98	56 / 57	plus
JLOC1	JLOC1_24657.2	1638	6e-21	1522 - 1578	98	56 / 57	plus
JLOC1	JLOC1_24657.1	1696	6e-21	1580 - 1636	98	56 / 57	plus
Harvest21	ABC16112	1239	3e-25	1169 - 1228	100	60 / 60	plus	ABC16112
Harvest35	U35_22027	1239	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1239 bp)

>U35_22027 1239 Hv_44K_v2
GGCGTGACTTGATGGACATGAAAATTTTCGTTGACACAGATGCTGATATTAGGCTTGCCC
GAAGAATAAGGCGTGATACAGTTGAAAGAGGTAGAGATGTTCTCTCAGTGCTTGAGCAGT
ACGGGATGTTTGTGAAGCCTGCCTTTGATGATTTTATCCTGCCTTCCAAGAAGTATGCTG
ATGTGATCATACCGCGAGGAGGAGATAACCATGTTGCCATTGATTTAATTGCGCAACATA
TTCGTACAAAACTTGGACAGCATGACTTGTGCAAATTTTATCGAAATGTTCACGTAGTTA
ACACAACTTTCCAGATACGGGGAATGCATACCCTCATTCGTGACCGGGAAATTACGACTC
CTGATTTTGTCTTCTATTCAGATCGGCTGATTCGTCTGGTAGTTGAACATGGTCTGGGGA
ATTTGCCATTTACAGAGAAGCAGGTCGTTACACCTACAGGATCTATTTATTCAGGAGTTG
ATTTCTGCAAGAAGCTCTGTGGAGTGTCGATTGTTCGAAGTGGTGAAAGCATGGAGAATG
CTTTGCGTGCTTGTTGTAAGGGGATAAAAATAGGTAAAATCCTAATACATCGTGTTGGAG
ACAATGGACAACAACTCATATACCACAAGCTGCCCAATGATATTGAGCATCGTCACGTTC
TACTTATGGATCCTGTGCTCGGTACAGGTAACTCAGCAAGTCAAGCTATACAGCTTCTTA
AAAGTACAGGAGTTCCAGAGGACCACATCATGTTTCTTAACCTTATCTCGGCTCCTGAAG
GAATCCATTGTGTCTGCAAGCAATTCCCTGGTCTGAAGATCATAACATCGGAAATCGACG
CCGGGTTGAACGAGGACTTCCGTGTCGTGCCAGGGTTGGGTGAATACGGCGATCGCTACT
TCGGCACTGACTAATCGGCTAAGATGCCGCTTTCATTGGCGGCGAAGCGATAGACGGGGT
AGAACTAACAGGAGATATACTGGTGTTTGGTTGTTTGTTGTATACCAGCAGAGTGGAGCG
GAGGCATCACTCTGGCAACCATTGGAGGTACCAATGTCACATGATGACATGCATTATTAT
CATAATTCATATGGCTAAGCTAGACACTTAGCTCTTTATGTTCATGTGACGAGCTTTGAC
TTTTTGCGAGTTTTGAGGCCCTTGCTTGATAACCTGCTCCTCGGCTGTTATAATGGCCTG
TGAAATGTAATACCTTGCCTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_22027 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41790.1	492	4e-172	protein\|phosphoribulokinase/Uridine kinase family protein, expressed
Brachypodium v1_2	Bradi3g41130.1	491	1e-168
Arabidopsis v10	AT3G27190.1	483	8e-163	\| Symbols: UKL2 \| uridine kinase-like 2 \| chr3:10039504-10042917 REVERSE LENGTH=483