barSeed - Barley Seed Development Database

Probe CUST_19147_PI390587928

Source Contig U35_10051

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19147_PI390587928	Hv_44K_v2	ATGTGAACAATACACACTTGTCTTCACGTGTTGGGCGCCTTAATCCAGATTGGACTGATC	658	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6342.1	2736	2e-24	2144 - 2203	100	60 / 60	minus	ABC09298
MLOC	MLOC_6341.2	4448	2e-24	2922 - 2981	100	60 / 60	minus	ABC09298
MLOC	MLOC_6341.1	4344	2e-24	2818 - 2877	100	60 / 60	minus	ABC09298
Harvest21	ABC23033	639	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_10051	736	3e-25	659 - 718	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_10051 736 Hv_44K_v2
ACATCTCCACACAACCCCGAAACCACCGCAGCCCAACCGTCGGCACGACCTATAATGCTC
GCCGCCTGCGCCTGGAGGCTGTCCCAGCGAGCCGTCACGTTCCTTCCCCGCGTGCGACCC
CAAATCCTAAACCCTTTCCCCATGGCCGCCGCCGCCGGCGCCGCCTCGCCCAAGCGCCTG
AGGGTATACTCGTCCGCCGCCGGCGACGCCGACCCCTCCAACGGCGCGGGGAACGGCAGG
CGCGTGGGGACCCACAACGGCAGCTTCCACTGCGACGAGGCGCTCGGCTGCTTCCTCATC
CGCCTCACCTCCCAGTTCGCGGGCGCCGACGTCGTCCGCACCCGCGACTCCCAGATCCTT
GATTCGCTGGAGGCCGTGCTTGACGTTGGTGGTGTCTATGATCCCAGCCGTCATCGCTAT
GATCATCACCAGAAGGGCTTCAACGAGGTCTTTGGATATGGCTTTAACACGAAACTTAGC
AGTGCTGGGCTTGTTTACAAGCATTTTGGTAAGGAGATAATTGCGAAGGAGTTTCAGCTT
AATGAGGACCATGAAGATGTTCACCGCGTGTATCTTGCCATATACAAAAGCTTTGTTGAG
GCACTTGATGCAATCGATAATGGAATCAATCAATATGACACGGAGCAAACCCCCAAGTAT
GTGAACAATACACACTTGTCTTCACGTGTTGGGCGCCTTAATCCAGATTGGACTGATCCA
GATCAATCACCTGAGA

Homology of Contig U35_10051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g46150.1	380	7e-138	protein\|GAMM1 protein-like, putative, expressed
Brachypodium v1_2	Bradi3g52006.1	386	4e-142
Arabidopsis v10	AT5G41970.1	373	2e-93	Metal-dependent protein hydrolase \| chr5:16791198-16792961 FORWARD LENGTH=373