- Probe CUST_19142_PI390587928
- Source Contig U35_10054
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19142_PI390587928 | Hv_44K_v2 | GGACGTTTGGGTGTAATTTATCTAGTTGTTGGCAATCCTTTGTACAACATACTTCTAATA | 672 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.259 | 1.579 | 1.538 | 1.168 | 0.272 | 0.244 |
| Raw | 43.020 | 80.930 | 69.865 | 78.548 | 5.906 | 5.978 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4373.1 | 3998 | 2e-24 | 1853 - 1912 | 100 | 60 / 60 | minus | ABC21521 |
| MLOC | MLOC_4372.1 | 2574 | 2e-24 | 1958 - 2017 | 100 | 60 / 60 | minus | ABC21521 |
| MLOC | MLOC_4372.4 | 2312 | 2e-24 | 1955 - 2014 | 100 | 60 / 60 | minus | ABC21521 |
| MLOC | MLOC_4373.2 | 2228 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC21521 |
| MLOC | MLOC_4373.3 | 2322 | 6e-24 | 1 - 59 | 100 | 59 / 59 | minus | ABC21521 |
| JLOC1 | JLOC1_2709.3 | 3985 | 8e-25 | 2082 - 2141 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2709.2 | 3876 | 8e-25 | 1973 - 2032 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2709.1 | 2521 | 8e-25 | 618 - 677 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21521 | 577 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | ABC21521 |
| Harvest21 | ABC05233 | 618 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_16317 | 618 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_10054 | 766 | 3e-25 | 673 - 732 | 100 | 60 / 60 | plus |
Contig Sequence (766 bp)
>U35_10054 766 Hv_44K_v2 CAGCGACAAGAGAGCCAGCGGATGGTACAGTTCCTCAAATGATCAAATTTGCAGAAGCTA TGGAATCCAGAATGGCAATGCCTCATTTTGCATATCTAAAGCAAAACTTCGTCANACAGT GGATGGAGTCACCATGAGGAATGAGGAAGACCAAGCGAAGTTTCATCTGGCGGGTATGGA CACCGATGATGGTTGCTTGGATGCATCTGCCAGTCCATGGCGAACAAGCTCAGCGAGTCG GACTCCCATGTTCTCGACCTGCGAACGGCATTCGAAGCAGGTCTGGGAGCTAACGGAGAA TGGACACCTTGTAAGCAGCTACTCAGGATTGTGTGCTACAGTGCACTCCAGCAAGGAAGG AGAGAGTGAAACTACTGGAGCACGAGCATGGACAGCAACTGGAGACAAAGGAGAGATCTA CGTGGCCTTCTTCAACCTTGACACTGCGAGCAGGAAGATCGCTGTAAGGGTGCCGGATCT AGAGAAGGTTGCAGGGAGAAAGTTGGCAAGGAAACACCTGTGCACCTGCACTGAAGTCTT GAGTGGAAAGAGCCGGAGTCTCATGAAGGGGGACATCTCAGCGGTGGTGAGCTCACATGG CTCCATGTTGTTTGAAATCCAGTGTTGAAGTCTCCCTAATGTTGGCAGTTCATCTTGGAA CTTGGAAGCATAGGACGTTTGGGTGTAATTTATCTAGTTGTTGGCAATCCTTTGTACAAC ATACTTCTAATAAAGTAAGCATTTTAATCAAAAAAAAAAAAAAAAA
Homology of Contig U35_10054 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g33420.1 | 650 | 9e-72 | protein|glycosyl hydrolase family protein 27, putative, expressed |
| Brachypodium v1_2 | Bradi2g13520.2 | 631 | 3e-88 | |
| Arabidopsis v10 | None |