barSeed - Barley Seed Development Database

Probe CUST_19134_PI390587928

Source Contig U35_10058

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19134_PI390587928	Hv_44K_v2	TAAAAGCACCTGTAGTTTGTGGGATATCTTCCCTCGGATATGATCACATGGAAATTCTTG	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11761.7	4658	2e-24	777 - 836	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.8	2523	2e-24	773 - 832	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.4	2768	2e-24	777 - 836	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.5	2426	2e-24	777 - 836	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.6	2629	2e-24	777 - 836	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.2	3151	2e-24	778 - 837	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.3	3870	2e-24	778 - 837	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.9	2689	2e-24	767 - 826	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.12	2298	2e-24	486 - 545	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.11	2181	2e-24	486 - 545	100	60 / 60	plus	ABC09386
MLOC	MLOC_11761.10	2577	2e-24	767 - 826	100	60 / 60	plus	ABC09386
JLOC1	JLOC1_7829.8	3261	8e-25	761 - 820	100	60 / 60	plus
JLOC1	JLOC1_7829.7	2607	8e-25	761 - 820	100	60 / 60	plus
JLOC1	JLOC1_7829.6	3263	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_7829.5	3318	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_7829.4	3283	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_7829.3	3160	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_7829.2	3274	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_7829.1	2463	8e-25	767 - 826	100	60 / 60	plus
Harvest21	ABC18810	515	1e-24	457 - 515	100	59 / 59	plus
Harvest35	U35_10058	516	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (516 bp)

>U35_10058 516 Hv_44K_v2
CGCTGATCAAGCAGAAGGTGCGCGCGGACACCGGCAACCGCGGCAACCAGTGGGAGCTCA
TGGCCAAGTACCTGCAGATACTGGAGCTGGAGGAACCCATCGCGCGGCTGAAGGTGGTTC
ACGTCGCCGGGACCAAAGGGAAGGGTTCAACATGCACATTTGCCGAGTCAATTCTTCGAT
CATGTGGTTTCCGCACTGGACTGTTCACCTCTCCACACTTGATCGATGTCCGTGAGCGGT
TTCGGCTTGATGGGCTGGACATTTCGGAAGAAAAGTTTATTAGGTATTTCTGGTGGTGCT
GGAACAAATTGAAGGTCAAGACTAGCGATGATATTCCAATGCCAGCCTACTTTAGGTTCC
TTGCGCTGCTAGCATTCAAGATTTTTTCAGATGAGCAGGTGGATGTAGCTGTGCTGGAGG
TCGGTTTGGGAGGGAAATATGATGCAACAAACGTGGTAAAAGCACCTGTAGTTTGTGGGA
TATCTTCCCTCGGATATGATCACATGGAAATTCTTG

Homology of Contig U35_10058 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02030.2	540	1e-104	protein\|folylpolyglutamate synthase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g30210.1	548	2e-113
Arabidopsis v10	AT5G05980.1	571	1e-87	\| Symbols: ATDFB, DFB, FPGS1 \| DHFS-FPGS homolog B \| chr5:1799738-1804441 REVERSE LENGTH=571