barSeed - Barley Seed Development Database

Probe CUST_19131_PI390587928

Source Contig U35_22030

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19131_PI390587928	Hv_44K_v2	GGCTTTACATTGTTCGCTAGTTTAGTTAATGCAAGAGATGAATTTCTATTGAGAGAAACC	351	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355531	1278	2e-24	1109 - 1168	100	60 / 60	plus	ABC01222
MLOC	MLOC_44991.1	1447	2e-24	114 - 173	100	60 / 60	minus	ABC01222 ABC39980
JLOC1	JLOC1_29195.1	1332	8e-25	60 - 119	100	60 / 60	minus
Harvest35	U35_22030	459	3e-25	352 - 411	100	60 / 60	plus

Contig Sequence (459 bp)

>U35_22030 459 Hv_44K_v2
CGGCACCCGGGATCAACCCGGCGAGGAGCTTTGGTGCCGCCGTGGTGTACAACAACAAGA
AAGCTTGGGGAGACCAGTGGATCTTCTGGGTTGGCCCGTTCATCGGCTCCGCCGTGGCCA
TGGTGTATCACCAGTACGTCCTCAGGAACAGCGCCATCTTCCGGTCCAACTACGATGCCG
CCGTCTAGCTACTTCCATCCATTAATGTGTTTCATATCTACTGGAGTAGTTGATGAGTTG
AGATCCACATTATGGATGGATCCAGCGTACGTGTGGCTGCTAAAATCCATTGTTAAGTAC
GAGTATGTTGTTTCGTTACTGAACGTATGAGTTGTATTGTATGTTAGTGTTGGCTTTACA
TTGTTCGCTAGTTTAGTTAATGCAAGAGATGAATTTCTATTGAGAGAAACCAAGTTATTA
CACTACTTCCCAGTAATTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None