barSeed - Barley Seed Development Database

Probe CUST_19127_PI390587928

Source Contig U35_22034

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19127_PI390587928	Hv_44K_v2	GAGAGGCAAATTGCATACATAGGTCACCAAATGATTGATGGATGCGTGGTGTTATTTTTT	862	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3692.2	1274	2e-24	1178 - 1237	100	60 / 60	plus	ABC06007 ABC15484
MLOC	MLOC_3692.3	1378	2e-24	1282 - 1341	100	60 / 60	plus	ABC06007 ABC15484
MLOC	MLOC_3692.1	1323	2e-24	1257 - 1316	100	60 / 60	plus	ABC06007 ABC15484
JLOC1	JLOC1_2222.1	1507	8e-25	1321 - 1380	100	60 / 60	plus
Harvest21	ABC15484	989	3e-25	863 - 922	100	60 / 60	plus	ABC15484
Harvest35	U35_22034	989	3e-25	863 - 922	100	60 / 60	plus

Contig Sequence (989 bp)

>U35_22034 989 Hv_44K_v2
GTCAGGGTGGGCATGAACAGGTTCGGCGACCTCAACCCCAGCGAGGTCGTCGAGCAGTTC
ACCGGGTTCAACAACACCAGGCTTCCGCACCCCGAAGCCCTCACCCCTCCCCTACCACTC
CTGGAAGCCTTGCTGCGTCGACTGGCGCTCCAGCGGCGCCGTCACCGGCATCAAGTTTCA
AGGCTCTTGCTTGTCGTGCTGGGCGTTCGCGGCCGTGGCGGCCATCGAAGGCATGAACAA
GATCAGGACCGGCGAGCTGGTGTCGCTCTCGGAGCAGCAGCTCGTGGACTGCGACACCGG
TAGCAGCGGCTGCAGCGGTGGGCGCTCCGACACGGCGCTCGGCCTCGCGGCAACCCGCGG
CGGCATCACGTCGGAGGCCAAGTACCCGTACAGCGGCATCCAGGGCACCTGCAACGTGGA
CAAGCTCTTGTTCGACAACCAGGCGTCCGTCAAGGGCTTCAAGGCCGTGCCTCCCAACGA
CGAGCATCAGCTGGCGCTCGCCGTGGCGCGGCAGCCCGTGACGGTGTACATCGACGCCAG
CGCGTGGGAGTTTCAGTTCTACACCGGTGGCATCTACCGCGGCCCTTGCTCCTCCGATGC
GTCGAGGGTGAACCACGCCGTCACCATCGTCGGCTACTGCGAAGGCCCCGGAGAGGACAA
CAAGTACTGGATCGCCAAGAACTCGTGGAGCAACGACTGGGGTGACCAGGGCTACATCTA
CCTCGCCAAGGACGTGCCGTGGAAGACGGGAACCTGCGGCCTCGCCACCTCGCCCTTCTA
CCCAACGGCTTGACGACCCATGCCGGTTTGCCAGTGGAGCGTTTGCATTCGCCAGCTTCT
TATGTTGTTTTATTTTATTTGAGAGAGGCAAATTGCATACATAGGTCACCAAATGATTGA
TGGATGCGTGGTGTTATTTTTTTCGGCTGTGATAATGCATAATAAGATATTAATGAAGTA
CAAAATCATTTGGCTCAAAAAAAAAAAAA

Homology of Contig U35_22034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g24600.1	362	3e-119	protein\|fruit bromelain precursor, putative, expressed
Brachypodium v1_2	Bradi2g07010.1	365	1e-131
Arabidopsis v10	AT5G45890.1	346	2e-60	\| Symbols: SAG12 \| senescence-associated gene 12 \| chr5:18613300-18614759 FORWARD LENGTH=346