barSeed - Barley Seed Development Database

Probe CUST_19115_PI390587928

Source Contig U35_10061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19115_PI390587928	Hv_44K_v2	TACCATGCATATGCTGAGATCTCAGAGGGTGGTTACTGAGGTAGAAAGAACTGAATGCGA	602	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249301.1	4111	2e-24	1938 - 1997	100	60 / 60	plus	ABC12300 ABC24674 ABC35191
MLOC	AK251885.1	1658	2e-24	632 - 691	100	60 / 60	plus	ABC24674
MLOC	MLOC_48547.2	317	2e-24	193 - 252	100	60 / 60	plus	None
MLOC	MLOC_48547.1	609	2e-24	466 - 525	100	60 / 60	plus	None
MLOC	MLOC_42452.1	215	9e-22	54 - 111	98	57 / 58	minus	None
JLOC1	JLOC1_31168.1	245	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_27501.1	161	2e-21	1 - 57	98	56 / 57	minus
Harvest35	U35_10061	667	3e-25	603 - 662	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_10061 667 Hv_44K_v2
AAAAAGGAAGCCCACGATTCCCCTCTTCTCTGCCAGATCACCACCACCTCTTCCTCCACC
TCGCCGCCGGATCTCCCCCTCCCCTCCTCCCACCTCGCAGCTCTGGCGGCTGCCGGATCC
ACCGCATCCCCCAACCTCGAGGTCCCCATCAAACCACGACGCCCTCCGATCCGACTCAAT
CCGGTGCTTGCGGCCACCCACGACCCTCCCCCTAGGGTTTCGGGTGCCGGCTCCGGTGCC
GATGGCCATGGCATCCTCCTCTCATTCGGGAGGAACTAGCTGTGTGTGAACTCCACCATG
ACGCTGCTGATGGTGATGACGTGATGTGCCGCGGCGTCGACGAGGATGTGCTAAGGCGGG
AAGTTGAAAGGGAATACATGACCATGAAACTCGATGGCACGGTGCTGGGGGTGGAAGACA
TGGCCAACACGGCGCTGTATGTGGAGTCAGACGAGGCTAGGGAGCTCTCAAACTGCACAG
AGTCAAGATTAATGCTATGCTCCCATCAATGATTCCAGCGGAAGATATTTGTAACCTCAA
GTGTTATACAAGGTTACTATCGCATTGCTGAATTTAGGTTACCACCAGCCAGCACCCCCC
TCTACCATGCATATGCTGAGATCTCAGAGGGTGGTTACTGAGGTAGAAAGAACTGAATGC
GACTCCT

Homology of Contig U35_10061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None