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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_19045_PI390587928Hv_44K_v2ACCCATCCAACAATTTAATAGAGATGGGAACTGAAACTAAAGTCGTTCCGTTGCTTGAAA34GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3180.6731.0451.3451.1081.078
Raw 2337.1777910.83310564.64320460.6806094.0076504.070



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249228.18583e-21783 - 8429758 / 60plus ABC02229 ABC02231 ABC07800 ABC37618
JLOC1JLOC1_27026.113055e-22816 - 8739857 / 58plus
Harvest21ABC022299761e-23760 - 8199859 / 60plusABC02229
Harvest35U35_471176333e-2535 - 9410060 / 60minus
Harvest35U35_140349661e-23719 - 7789859 / 60plus



Contig Sequence (633 bp)

>U35_47117 633 Hv_44K_v2
TACTTAGGCCCCCCCTCGAGCTTTTTTTTTTTTTTTTCAAGCAACGGAACGACTTTAGTT
TCAGTTCCCATCTCTATTAAATTGTTGGATGGGTGCACCCATAGACCCATACAGGCCTTC
TGCCATCACTTCACAATATGACACTTGAATTCAGTCAGGTAGGTGGACAGTACAATCCCA
TATAGCAGCAGCAGAACAGGAACAAAGATACATTAGGTGTAACAAGCGAAGATGGCTCCA
ACATCATCCTCCACCTAGGCTCGCAGGGTCAGCCCATCGCGTACTTCTGGGTCCAGCTCC
TCGCTGTGGACTCATACTTCGCACGGTCGCTCTTGTACATGTGCGCAATCTCCGGGACCA
ACGGGTCGTCGGGGTTTGGGTCCGTTAGTAGAGAGCAGATTGAAAGGAGCACCTTTGATA
CTGTCAATGCAGGGCTCCATTGCTCCTTCAAGATATCAAGACAGATGCTTCCATTGCTGT
TGATATTTGGGTGGAAAACCCGACGAGCAGCAGAAGCAGGCGCGATGGCCCGTACCAAGC
AGACCGCCCGCAAGTCCACCGGCGGCAAGGTCCCCCGCAAGCAGCTCGCCANCAAGGCGG
CGAGGAAGTCGGCGCCGACCACCGGTGGCGTGA



Homology of Contig U35_47117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None