barSeed - Barley Seed Development Database

Probe CUST_19032_PI390587928

Source Contig U35_35140

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19032_PI390587928	Hv_44K_v2	AGAAGAAAAGGACACCTCTCCTACTCAACTCTCATGCTTTTACTTACAACACGCGTACAT	723	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6391.1	2361	7e-23	330 - 389	98	59 / 60	plus	ABC06447
JLOC1	JLOC1_4167.1	2338	4e-23	1973 - 2032	98	59 / 60	minus
Harvest35	U35_35140	852	3e-25	724 - 783	100	60 / 60	plus

Contig Sequence (852 bp)

>U35_35140 852 Hv_44K_v2
ATAGGGCGAATTGGGCCCTTTTCATAATGCTCGAGCGGCCGCTGGACTAACTGCGTGGCA
TTATTCTTTTGTGCGGAACTGTATGGCAGTTGTTGCCACATTATTCTCTGAATTAGAACA
ACTGAACAAGCTGTCAGACTATGCAGCCAGTTATATGCAACTATTCTCTCTCAAGGGGAA
CCTTCCGCTCATCCAGACCTTAAAGGCGAGTTGCATCATACGCTATACATACACTTCACA
TCTAACAGGGCATCATGTACATAACTCTGCTGGCACATGAGCCGCAGGGCATACAGGGTA
CATATGTCAGAAGGATCGTGTTATCTTCAGCTGCATCACTGGGATATCTTCGGTACACAC
AACTTAACCCCAATGCCCCGGAGCGGCCGCTCGCAAGGTGAGCTTGCCTGCGCGGGTAGG
CACTGCTCCGCACTCTCCTTCATGATCATGGCATGTGTCTGCCTCTTGGGGTCTGCCGTA
GCGTTTGTATTGTTCATCAGAACGAGGAAGTTTTATAGGCGGGTTATATACGCCAGGCTG
CTCTCTTTTGTAGATAAATAAAATGAGGAAATGTATATATGCAAACGATGCTCAGTTTTC
CTAGCAATTGGTACTGTAGCATTCTCTTTATACAGTAACAATACAATGGTCACTTCCTGT
GTGAATAAGCAAATGAGAAAAGAGACAGCGGCCGCTGGTTTCAGAACGAGGGGAAAAAAC
TGAAGAAGAAAAGGACACCTCTCCTACTCAACTCTCATGCTTTTACTTACAACACGCGTA
CATGGCGGTTTCGCCCAGCATTTCTTACCGGCGCGATGGCGGCCCGTGCTCTTGTGGATG
TAAAATTAATTA

Homology of Contig U35_35140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None