barSeed - Barley Seed Development Database

Probe CUST_18956_PI390587928

Source Contig U35_23199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18956_PI390587928	Hv_44K_v2	AATTGGGGGAAATGACTACAACATTCCTCTTACCTCTTCGGTGCCTGTTGAGAAGATTCG	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364585	4023	2e-24	546 - 605	100	60 / 60	plus	ABC13714 ABC26368
MLOC	MLOC_57817.3	803	2e-24	84 - 143	100	60 / 60	plus	ABC13714
MLOC	MLOC_57817.2	1551	2e-24	585 - 644	100	60 / 60	plus	ABC13714
MLOC	MLOC_57817.1	1504	2e-24	742 - 801	100	60 / 60	plus	ABC13714
JLOC1	JLOC1_37537.1	1635	8e-25	671 - 730	100	60 / 60	plus
Harvest21	ABC17581	508	3e-25	383 - 442	100	60 / 60	plus
Harvest35	U35_23199	673	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_23199 673 Hv_44K_v2
ACGAGAAAGAGAGAGACAGGAAGAGAGATTCAGCATGGCTCCCTCTGCCACAATGTTGCC
GGTGAAATTGGCGGTGGTGCTACTGGCGCTGGCGGCGGCGCGGCCGGCGCGGGCGTGCTA
CTCGCGGGTGTTCAGCTTCGGGGATTCGCTGGCGGACACGGGCAACTACCGCTACGTCTA
CGGCAACGGCACCGGGCCCAGGCTGCCCTACGGCGAGACCTTCTTCCACCGCGCCACCGG
CCGCTTCTCCAACGGCCGCATCGCCGTCGACTTCATCGCGGACGCGCTAGGGCTGCCGTT
CGTGAGGCCGTACTGGAGCGGGCGGAGCTCGGAGGACTTCGCCGGAGGGGCCAACTTCGC
CGTGGGCGCCGCCACGGCGCTGAGCCCGGAAGCCTTGTGGGAGCACGGGTTCGCCGCGGC
GAGGGCCGACTTGGTCCACCTCGACATGGAGATGAGTTGGTTCCGCGACATGCTCCACCT
GCTCTGCCCCAGGGATTTAGCCGATTGTGTGGGCATGATGAACAAATCTCTTTTCTTGGT
TGGAGAAATTGGGGGAAATGACTACAACATTCCTCTTACCTCTTCGGTGCCTGTTGAGAA
GATTCGCGCGTTCGCTCCGAGTGTTATTTCCAAAATTTCATCTACAATCACAGATCTGAT
TGGATTGGGAGCC

Homology of Contig U35_23199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46080.2	404	2e-79	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g45220.1	390	6e-82
Arabidopsis v10	None