barSeed - Barley Seed Development Database

Probe CUST_18950_PI390587928

Source Contig U35_35177

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18950_PI390587928	Hv_44K_v2	ACGCATCAAAGAAAAAGGTGCTAAAAGGATGTACCAAATATTTTTTGGACGCTTTTGGTC	648	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14772.2	4613	2e-24	151 - 210	100	60 / 60	minus	None
MLOC	MLOC_14772.1	3001	2e-24	971 - 1030	100	60 / 60	minus	ABC09103 ABC09104
MLOC	MLOC_14771.1	2336	2e-24	858 - 917	100	60 / 60	minus	ABC09103 ABC09104
JLOC1	JLOC1_10092.1	2601	8e-25	2005 - 2064	100	60 / 60	plus
Harvest35	U35_35177	737	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_35177 737 Hv_44K_v2
TATAGGGCGAATTGGGCCCTTTCGATAGATGCTCGAGCGGCCGCTCTATAACGTTCATGC
TCAACCGTGTTCTGAATGGGTTGATGTTGACAGGGAATCAGCAGATTTCTAGGGATCTGT
TGAGAATGCAAGAGAAATATAGACGCTTGCGACGAGAAATAAGATTATGATTGCCATTGA
GTTCTGCGATGGCATAGTGCATCTTGAGGCTTGGATACAGAAGTTCGGTGCAACCCTCGT
GCGTAGCAGTTCATACTTGATACTCCTCTGGTGGTGTTATGATCAGTCTGATATCTCAGG
GACACTTGATTGTTGGGTTTGAGGGTGTTGGATATCTAGCGAAACAGTGTTTTCTTTGAC
TGACCTGACTGTGTGAGCGCGCATACTGCCCGATGCCAAGAAGAAAAAAGAAGAGAAGAA
AATGACGCTCTTGTAGCCATTAAATGATGCTTGTTCAAGGTCTCCAGGCGAGAGGCTAGG
AGCGTAAGATCATCAGCCTGGAGTGCGACGATGTGAATCTGAATTCCAGCATGTGCTCCG
ACGAGGAAGACTTGAATTTTTTTTGTTTGAATGTTGGTAAGAGATCTACCAAATTCATTG
ATCAGCAAGGAGGCAAACATTACATGTGAAGCCCAGGAAGAGGCGGCAACGCATCAAAGA
AAAAGGTGCTAAAAGGATGTACCAAATATTTTTTGGACGCTTTTGGTCCTATATATTTCT
TTTAAAATAAGACTAGC

Homology of Contig U35_35177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None