barSeed - Barley Seed Development Database

Probe CUST_18900_PI390587928

Source Contig U35_28047

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18900_PI390587928	Hv_44K_v2	TACAGTACTTCCAAAGGAATGGTAAGGAGGCATGGGTTTCACTTGGTGGAGTGATCTTGT	505	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17989.1	1274	2e-24	120 - 179	100	60 / 60	minus	ABC06920 ABC26667
JLOC1	JLOC1_12434.1	1282	8e-25	1045 - 1104	100	60 / 60	plus
Harvest21	ABC26667	606	3e-25	506 - 565	100	60 / 60	plus	ABC26667
Harvest35	U35_28047	606	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_28047 606 Hv_44K_v2
GACAACGGAGATGGTGGCACGTTTGCGCTTTACTCGCTGATATCACGGTATGCGAAGATC
AGGATGATACCGGACCAACAGGCCGAGGATGCTGCCGTGTCGAATTACCGGATAGAAGCC
CCAAATTCGCAGCTGAGGAGGGCGCAGTGGGCCAAGCAGAAGCTGGAATCTAGCAAGGCA
GCCAAGATCGCACTCTTCACCCTCACCATCCTCGGCACATCCATGGTGATCGGCGATGGA
ACCCTGACGCCTGCAATTTCTGTGCTGTCTGCAGTGGGTGGGATCAGAGAAAAAGCGCCG
AGCCTGGCTCAAACACAAGTGGTCCTCATCTCGGTGGCGATCCTATTCATGCTCTTCTCG
GTCCAGCGTTTCGGGACCGACAAGGTCGGCTACACATTTGCTCCAGTCATCTCAGTGTGG
TTCCTTCTGATTGCTGGTATTGGGATGTACAACCTCGTCGTCCATGATATTGGTGTTCTA
CGGGCCTTCAATCCGATATATATAGTACAGTACTTCCAAAGGAATGGTAAGGAGGCATGG
GTTTCACTTGGTGGAGTGATCTTGTGTGTCACAGGCACAGAAGGTATGTTTGCCGACCTC
GGCCAC

Homology of Contig U35_28047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32920.4	793	6e-118	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi5g08520.1	676	5e-128
Arabidopsis v10	AT4G13420.1	785	1e-85	\| Symbols: HAK5, ATHAK5 \| high affinity K+ transporter 5 \| chr4:7797038-7802174 REVERSE LENGTH=785