barSeed - Barley Seed Development Database

Probe CUST_18839_PI390587928

Source Contig U35_15028

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18839_PI390587928	Hv_44K_v2	TACTGAAACCTCTGAAGTATATTGGAATTGAAGTTTGGCAGGTAAAAGCCGGTTCTGTTT	992	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248906.1	1621	2e-24	997 - 1056	100	60 / 60	plus	ABC02747 ABC34622 ABC49879
MLOC	MLOC_31971.5	324	2e-24	177 - 236	100	60 / 60	minus	ABC02747
MLOC	MLOC_31971.4	416	2e-24	264 - 323	100	60 / 60	minus	ABC02747 ABC49879
MLOC	MLOC_31971.3	413	2e-24	267 - 326	100	60 / 60	minus	ABC02747 ABC49879
MLOC	MLOC_31971.1	897	2e-24	509 - 568	100	60 / 60	minus	ABC02747 ABC49879
JLOC1	JLOC1_20929.1	1074	8e-25	343 - 402	100	60 / 60	plus
Harvest21	ABC02747	1628	3e-25	985 - 1044	100	60 / 60	plus	ABC02747
Harvest35	U35_15028	1655	3e-25	993 - 1052	100	60 / 60	plus

Contig Sequence (1655 bp)

>U35_15028 1655 Hv_44K_v2
AGAAGCAGCAGCCACCACCTACTCTTCGTCTCCGGCGATGTGTAGCAGCCGCCGGCGGGG
CGACCGCCAGCTCCAGCTCCTGCACCGCCTCCTCGCGCTCTCCTCGCTGCTCCTGCTCGC
CTCCGGGGAGGTCATCTTCGAGGAGCGGTTCGAAGATGGTTGGGAGACACGTTGGGTGAA
ATCCGATTGGAAAAGGAGCGAAGGGAAAGCCGGTACATTCAAGCACACGGCAGGGAAATA
TTCTGGGGATCCTGATGACAAAGGCATTCAAACAACGATAGATGCTAGGCATTTTGCCAT
CTCAGCCAAGATACCGGAGTTCAGTAACAAGGGCCGAACATTGGTGGTCCAGTACTCCAT
AAAGTTTGAGCAGGAAATTGAATGTGGCGGCGGCTATATTAAGCTAATGTCTGGTTATGT
CAATCAGAAGAAATATAGTGGAGACACTCCATACAGCTTGATGTTTGGGCCAGATATATG
CGGGACTCAAACAAAGAAGCTGCATCTTATACTCTCTTACCAGGGGCAGAACTATCCTAT
CAAAAAAGATCTACAATGCGAAACCGACAGGCTCACGCATGTTTACACATTCATTCTTAG
GCCCGATGCATCTTATAGTTTACTTGTTGATAACCGTGAAAGAGAATCTGGGAGCATGTA
CACTGATTGGGACATCTTGCCTCCTCGTAAAATCAAGGATGTTGGTGCCAAAAAGCCTAA
GGATTGGGATGACAGAGAGTATATTGAGGATCCCGATGCGGTTAAACCTGAGGGCTATGA
TTCTATTCCAAGAGAGATTCCTGACCCAAAGGATAAGAAGCCCGACACGTGGGACGATGA
TGATGATGGCATATGGAAACCTAGGAGGATACCGAATCCAGCATACAAAGGACAATGGAA
GCGCAAGAAAATTAAGAACCCTAACTACAAGGGTAAATGGAAGATCCCATGGATTGATAA
TCCAGAGTTTGAGGATGATCCAGATTTATATGTACTGAAACCTCTGAAGTATATTGGAAT
TGAAGTTTGGCAGGTAAAAGCCGGTTCTGTTTTTGACAACATCCTCATTTGCGATGACCC
GGAATATGCAAAACAGGTTGCCGATGAAACGTGGGGTGCAAATAAGGAGGCTGAAAAGGA
GGCTTTTGAAGAAGCTGAAAAGGAGAGGAAAGCTAGAGAAGATAAGGAAGCTCAACAAGC
AAGGGAGGAAGGAGAGCGACGGAGGAGAGAGAGGGGTGATCGACACCGTGGCAGGGACCA
CTACAAGGACAGATACAAAAGACGCAACAGGGATCACTGGGATGACTACCATGATGAGCT
TTGAGGCCCCAAAAATCTTCCATTATTCGAAGGAGAAGCTGGGATTTGACATGAACATTG
CGTTATAGTTGCTGCCAATAATTGAAGTGTTCCTTGTCTCGTGTGAGGGAAACTGATTGA
ATTGACCACGAAGATCATTCCTATGTGACAGCAGGGCAGACAATTCCACCTATCCTCAAA
AGTCAAAAACTTGGCCTTGGCCCTGAAATCTGATGTTGTGAGTGTAATGTACATGGTCAG
CGATGTGCTTCCTTTTGTAAACAGCTGTTGCTAATACAAATAAAGAGATTTTCAAGCATA
AAAAAAAAAAAAAAAAATTGTTGCTCAAAAAAAAA

Homology of Contig U35_15028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g67054.1	446	protein\|calreticulin precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g57537.1	426
Arabidopsis v10	AT1G08450.1	424	\| Symbols: CRT3, PSL1, EBS2, AtCRT3 \| calreticulin 3 \| chr1:2668008-2671800 REVERSE LENGTH=424