barSeed - Barley Seed Development Database

Probe CUST_18827_PI390587928

Source Contig U35_15034

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18827_PI390587928	Hv_44K_v2	ACATTTGTGTCCACTTTTACCCCTTGGAAATAGCTGGTCATATACCTTGCAGTGAAAAAA	1479	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.061	1.277	1.157	1.064	0.440	0.438
Raw	1517.843	2899.151	2278.443	3319.385	479.997	513.608

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250321.1	1324	3e-22	1154 - 1209	100	56 / 56	plus	ABC02466 ABC31772
Harvest35	U35_15034	1550	3e-25	1480 - 1539	100	60 / 60	plus

Contig Sequence (1550 bp)

>U35_15034 1550 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATATGATAGTCCGACCAACTTCCTCAAAATCTTAGCATAAGA
TACTACAAAATGCCTTTTAACATACCAGGAGATGACATAAATGGCAAAGTCTTTTCTAGT
CATAATTAAGCACTCAGCAACATTGGCACAGGGATACGGTGCTAAACCAAGCAAAGGCTG
ATGGTGAAAGGATGAAGACAGAAATGTGCTTATTTCTTCTTGGCATCTCCGGCCTTGGTC
TTCTTCACACCACGGATCTTCTTTGTTCTGTTCTTCCTTTCCTTGATCTGCTTGCGTGAC
TTCTCTACCTTGGTAGCAAGACCGTTCCTGATGAGGCGGTACTTGGGCTCGAACTTCTCA
GCCCGCCGCCGGCCGAATCGAACGCGGCGGCGCTCCCTCTCCGCCCCCCTGAGCTAATCG
GCTAGGTCCCCGGAGTGCTCCGCCACGCAGCACCGCGAGGCCAATCGCTTATGACCTGAT
CGGAGCAGATCAGGGGGGAAAGACAAAATTATAGGGGCCCTAGATACTCCTGCCTGCAAC
CAGGTGCTCAGCCTCGATGGCGATGCCCGGATCCTGCCCCTCAGCCCCGTCTGCCGGCCA
CCGTCCCATTTGCCTTGCCGATGCTTCAGGGGGAGCGGGATCCCAAGACATGCTGCGGCC
ACGTCTGGTGCTCTTTGGCGACTCCATCACTGAGCAGTCCTTCCGCCCCGGCGGTTGGGG
AGCGGCCCTTGCCGACACCTACTCCCGCAAGGCTGATGTTGTTGTCAGAGGCTATGGTGG
GTACAACTCAAGATGGGCCCTGTTCCTGATCCAGCGCATCTTTCCCCTGGTTGGCTTACC
ACCCATTGCTACGACTATATTCTTTGGCGCTAATGATGCAGCGCTTCTAGGACGAACAAG
CGAGCGACAACATGTTCCAGTTGAGGAGTATAAACAGAATCTCAAAACAATTGTTAATCA
CCTGAAGGATTGTTCCAAGTCCATGGTGATTTTGCTTATCACCCCACCTCCTATTGACGA
AGATGGAAGAGAAAGATATGCACGATCACTCTATGGAAAAGATGCAAGGAGGCTCCCTGA
AAGGACAAATGAAATGGCTGGTGTCTATGCAGGTCAATGTATAGAACTAGCCAAAGAAAT
GGATGTACAGTATGTTGATCTTTGGTCAAACATGCAAGCGACTGAAGGTTGGCAGAAACT
TTACTTAAGTGATGGACTGCATCTGACACCGGAAGGAAACGCTCTGGTCCACAAGGAGGT
TGTCCAGACCTTGAGAGGCGCTGGTCTGAAACCTGAAGATATGCCGCATGATTTCCCTCA
TCATTCCAAAATCGACGGACTTCACCCGGAAAAGGCCTTCCAGTGAGGTGATATCAGGCT
GTGCGATGTTGAAGTTTGAACCTCTTGCTTCTCATATCTGGAGGTTTTGCTTTCCTCGTG
TTTTACTTTTTCTCTTGTTGCGAACCTTTGAATTGTGAAACATTTGTGTCCACTTTTACC
CCTTGGAAATAGCTGGTCATATACCTTGCAGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15034 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33690.1	271	3e-159	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g13430.1	266	1e-165
Arabidopsis v10	AT5G62930.1	242	7e-114	SGNH hydrolase-type esterase superfamily protein \| chr5:25254912-25256357 FORWARD LENGTH=242