barSeed - Barley Seed Development Database

Probe CUST_18825_PI390587928

Source Contig U35_15036

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18825_PI390587928	Hv_44K_v2	CTGCTTGTGTTCTGCTTTCTCAAGTTGAGATGAGTTCATTGAGTGGGTTTCTCATCCAAA	674	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15667.1	1390	2e-24	1044 - 1103	100	60 / 60	plus	ABC02468 ABC31761
JLOC1	JLOC1_10757.1	1194	8e-25	980 - 1039	100	60 / 60	plus
Harvest21	ABC02468	787	3e-25	671 - 730	100	60 / 60	plus	ABC02468
Harvest35	U35_15036	794	3e-25	675 - 734	100	60 / 60	plus
Harvest35	U35_27870	377	6e-22	304 - 363	97	58 / 60	plus

Contig Sequence (794 bp)

>U35_15036 794 Hv_44K_v2
GTGCCGCCGCCGCCTCTCACTCGCGCCCCTGCCGTAGCTAGGAATTCCTGCGAAGAAGAA
GCACCTCGAGCATCAGCAGCAGTCATGGCCGACGCGAAGACGGCGCCCGCGGTGACTCTC
CGCACCCGTAAGTTCATGACGAACCGTCTCCTCTCACGCAAGCAGTTCGTGCTCGAGGTG
ATCCACCCTGGCCGCGCCAACGTGTCCAAGGCGGATCTCAAGGAGCGTCTGGCGAAGATT
TACGAGGTGAAGGACTCGAACTGCATCTTTGTGTTCAAGTTCCGCACCCACTTCGGAGGC
GGCAAGTCCACCGGCTTCGGCCTCATCTATGATAACCTCGAGGCCGCCAAGAAGTTCGAG
CCCAAGTACAGGCTGATCAGGAACGGGCTAGCCACCAAGATAGAGAAGTCACGCAAGCAG
ATCAAGGAGAGGAAGAACAGGACAAAGAAGATCCGTGGAGTCAAGAAGACAAAGGCTGGG
GATGCCAAGAAGAAATGAGGAAAGATTCTTGACTGTTGGCTGCTTTCAGTTCTATCTGTT
CACAATCAGTGTCTGTACCCTTTAGTAAAGCTCTTTGTGGCAATGTCGCAGTATGCTTGA
TTTAGTAGAAAAGTGAATTTTGAGCTTTTACATCGTCCCCGGTATGCTGGTTAGTATTAC
TGACTTGATTTTTGCTGCTTGTGTTCTGCTTTCTCAAGTTGAGATGAGTTCATTGAGTGG
GTTTCTCATCCAAAAAAAAAAAAAAAAATTTGTTTAAGTTGTGGATCTTTTTTTTTCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_15036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13530.1	139	3e-79	protein\|40S ribosomal protein S24, putative, expressed
Brachypodium v1_2	Bradi3g08680.2	138	7e-82
Arabidopsis v10	AT3G04920.1	133	4e-68	Ribosomal protein S24e family protein \| chr3:1360989-1362065 FORWARD LENGTH=133