barSeed - Barley Seed Development Database

Probe CUST_18803_PI390587928

Source Contig U35_15040

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18803_PI390587928	Hv_44K_v2	TCTTGTCACAGTGATTGTAATCAAGAGTGCGTTTCTTCATGCAATATATTGACGTGTTCC	2156	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361670	2656	2e-24	2590 - 2649	100	60 / 60	plus	ABC01650 ABC14788 ABC16646 ABC48380
MLOC	MLOC_62030.2	2333	2e-24	2260 - 2319	100	60 / 60	plus	ABC01650 ABC48380
JLOC1	JLOC1_40579.1	3384	8e-25	1769 - 1828	100	60 / 60	minus
JLOC1	JLOC1_40578.1	4568	8e-25	2286 - 2345	100	60 / 60	plus
Harvest21	ABC01650	2351	3e-25	2151 - 2210	100	60 / 60	plus	ABC01650
Harvest21	ABC48380	161	2e-21	18 - 76	97	57 / 59	minus	ABC48380
Harvest35	U35_15040	2239	3e-25	2157 - 2216	100	60 / 60	plus

Contig Sequence (2239 bp)

>U35_15040 2239 Hv_44K_v2
GGCGAGCAACCGAACCGAATGATTCCGCTGTGCGCACCCTCCACACCCGCTATAATAGCG
CCACGCCCTCGTCGCCTTCGTCACCGCACCACCACTCCCTCCCCACCTCACTCCCGATCC
CCCCACCACCGCGGCCACCTCCACCTCGCGTCCTCCTCCTCGTCGGCGCACCGCCCCCGA
CCCCTCGCGCGCGCGCAGCGGCCAGGCGCCGTCGTCACTGCGGCGGACATGGTGTTCTCC
GTGACCAAGAGGGACACCACGCCCTACGAGGGCCAGAAGCCCGGCACCTCCGGCCTCCGG
AAGAAGGTTACAGTATTCCAGCAGCCTCATTACCTTGCGAATTTCGTCCAATCAACATTC
AATGCCCTTCCAGCTGACCAAGTAAAAGGTGCCACCATTGTTGTCTCCGGCGATGGGCGC
TATTTCTCAAAGGATGCTGTTCAGATCATCGCAAAAATGGCTGCTGCTAATGGAGTAAGA
CGTGTCTGGGTTGGACAAGACAGTCTCCTGTCAACTCCAGCTGTATCTGCTATCATCCGT
GAAAGAATTTCTGCAGATGGCGCAAAGGCTACTGGTGCCTTCATTTTAACAGCAAGCCAT
AACCCAGGTGGTCCAACCGAGGACTTTGGAATCAAATACAACATGGAGAATGGTGGACCT
GCCCCTGAGTCTGTTACCGATAAGATCTTCTCTAACACAAAGACAATTACTGAATACCTC
ATCGCGGAGGACCTTCCAGATGTTGATATTTCTGTGACAGGTGTCACTTCCTTCACTGGA
CCTGAAGGCCCTTTTGATGTGGATGTCTTCGACTCTGCTACAGATTACATCAAGCTAATG
AAGACAATCTTTGACTTCGAGTCTATTAAGAAGCTTCTGGCATCTCCAAAGTTCTCGTTC
TGTTTTGATGGCCTTCACGGTGTTGCTGGAGCTTACGCAAAGCGCATTTTTGTGGATGAG
CTCGGTGCCAGTGAAAGCTCACTGTTGAACTGTGTTCCAAAGGAAGACTTTGGTGGTGGT
CATCCGGACCCTAACCTCACCTATGCAAAAGAACTGGTTGATCGGATGGGTCTTGGGAAA
ACCTCAAATGGTGAACCCCCTGAATTTGGTGCTGCAGCTGATGGAGATGCTGACCGTAAC
ATGGTTCTGGGTAAAAGGTTCTTCGTGACACCATCAGATTCGGTTGCCATTATTGCGGCC
AATGCTGTTCAATCAATTCCTTACTTTGCTTCTGGCCTGAAGGGAGTTGCCAGGAGCATG
CCGACATCAGCTGCACTTGATGTAGTTGCAAAGAATCTAAATCTCAAGTTCTTTGAGGTG
CCTACTGGGTGGAAATTTTTTGGAAACCTCATGGATGCTGGAATGTGCTCAGTTTGTGGT
GAAGAAAGCTTTGGCACTGGTTCTGACCACATCCGTGAAAAGGATGGTATTTGGGCTGTT
CTAGCATGGCTATCTATTCTAGCTTACAAGAACAAGGACAACCTTGGAGGAGATAAGCTT
GTTACTGTTGAAGACATTGTTCTTCAGCACTGGGGTACTTATGGTCGCCATTATTATACA
CGATATGACTATGAGAATGTCGATGCAGAAGCTGCCAAGGAACTCATGGCTAACCTAGTC
AAGATGCAGGCGTCCCTGCCTGATGTTAACAAGTCGATCAAAGAGATCCAGCCTGCTGTT
GCAGATGTGGTCTCGGCTGATGAGTTTGAGTACAAGGATCCTGTTGATGGTTCTGTCTCC
AAGCATCAGGGTATCCGGTATCTCTTTGGAGATGGTTCCCGACTGGTGTTCCGTCTTTCT
GGAACTGGTTCAGTTGGTGCTACTATCCGTATTTACATTGAGCAGTATGAGAAGGATTCT
TCCAAAACCGGGAGGGAGTCAAGTGACGCTCTTTCTCCACTGGTTGATGTGGCCCTGAAG
CTTTCCAAGATTCAGGAGTACACCGGCCGATCCGCCCCCACAGTGATCACATAAATTTTG
ACCTAGATATGTGCCGAGGCCGCGTATGAAGTTCGGTTCCTGGCCTCCCCTGTTCGATAG
CCTTTTTTTACATCTCATCTCCCTTACATCTGAATAAATGTATGTGCCAGACCGTCCCCG
TTTCGTTGCCTATACTGCATACTCTGCTGTGCTGCCGGTACAGTATACGGCCGTAATCTT
GTCACAGTGATTGTAATCAAGAGTGCGTTTCTTCATGCAATATATTGACGTGTTCCTTTT
TAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g50480.1	583	protein\|phosphoglucomutase, putative, expressed
Brachypodium v1_2	Bradi1g11440.1	584
Arabidopsis v10	AT1G70730.3	662	\| Symbols: PGM2 \| Phosphoglucomutase/phosphomannomutase family protein \| chr1:26669020-26673166 REVERSE LENGTH=662